SMTL ID : 5gja.1

Crystal structure of Arabidopsis thaliana ACO2 in complex with 2-PA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-octamer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.180, D.182, H.237 Ligands: 6PC.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.180, A:D.182, A:D.182, A:H.237 ZN.3: 4 residues within 4Å: Chain B: H.180, D.182, H.237 Ligands: 6PC.4 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.182, B:D.182, B:H.237 ZN.5: 4 residues within 4Å: Chain C: H.180, D.182, H.237 Ligands: 6PC.6 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.180, C:D.182, C:D.182, C:H.237 ZN.7: 4 residues within 4Å: Chain D: H.180, D.182, H.237 Ligands: 6PC.8 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:H.180, D:D.182, D:D.182 ZN.9: 4 residues within 4Å: Chain E: H.180, D.182, H.237 Ligands: 6PC.10 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:D.182, E:D.182, E:H.237 ZN.11: 4 residues within 4Å: Chain F: H.180, D.182, H.237 Ligands: 6PC.12 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:H.180, F:D.182, F:D.182, F:H.237 ZN.13: 4 residues within 4Å: Chain G: H.180, D.182, H.237 Ligands: 6PC.14 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:H.180, G:D.182, G:D.182 ZN.15: 4 residues within 4Å: Chain H: H.180, D.182, H.237 Ligands: 6PC.16 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:H.180, H:D.182, H:D.182, H:H.237

8 x 6PC: PYRIDINE-2-CARBOXYLIC ACID(Non-covalent)

6PC.2: 11 residues within 4Å: Chain A: K.161, L.177, H.180, D.182, I.187, L.189, N.219, H.237, A.251, F.253 Ligands: ZN.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.187, A:L.189, A:A.251 Water bridges: A:K.161, A:S.249 Salt bridges: A:K.161, A:H.180, A:K.291 6PC.4: 11 residues within 4Å: Chain B: K.161, L.177, H.180, D.182, I.187, L.189, N.219, H.237, A.251, F.253 Ligands: ZN.3 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:I.187, B:L.189, B:A.251 Salt bridges: B:K.161, B:H.180, B:K.291 6PC.6: 11 residues within 4Å: Chain C: K.161, L.177, H.180, D.182, I.187, L.189, N.219, H.237, A.251, F.253 Ligands: ZN.5 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:I.187, C:L.189, C:A.251 Water bridges: C:K.291, C:K.291 Salt bridges: C:K.161, C:H.180, C:K.291 6PC.8: 11 residues within 4Å: Chain D: K.161, L.177, H.180, D.182, I.187, L.189, N.219, H.237, A.251, F.253 Ligands: ZN.7 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:I.187, D:L.189, D:A.251 Salt bridges: D:K.161, D:H.180, D:H.237, D:K.291 6PC.10: 11 residues within 4Å: Chain E: K.161, L.177, H.180, D.182, I.187, L.189, N.219, H.237, A.251, F.253 Ligands: ZN.9 10 PLIP interactions: 10 interactions with chain E Hydrophobic interactions: E:I.187, E:L.189, E:A.251 Water bridges: E:K.161, E:K.291, E:K.291 Salt bridges: E:K.161, E:H.180, E:K.291 pi-Stacking: E:F.253 6PC.12: 11 residues within 4Å: Chain F: K.161, L.177, H.180, D.182, I.187, L.189, N.219, H.237, A.251, F.253 Ligands: ZN.11 7 PLIP interactions: 7 interactions with chain F Hydrophobic interactions: F:I.187, F:L.189, F:A.251 Water bridges: F:K.291 Salt bridges: F:K.161, F:H.180, F:K.291 6PC.14: 10 residues within 4Å: Chain G: K.161, L.177, H.180, D.182, I.187, L.189, N.219, H.237, A.251 Ligands: ZN.13 8 PLIP interactions: 8 interactions with chain G Hydrophobic interactions: G:I.187, G:L.189, G:A.251 Water bridges: G:K.161, G:S.249 Salt bridges: G:K.161, G:H.180, G:K.291 6PC.16: 11 residues within 4Å: Chain H: K.161, L.177, H.180, D.182, I.187, L.189, N.219, H.237, A.251, F.253 Ligands: ZN.15 9 PLIP interactions: 9 interactions with chain H Hydrophobic interactions: H:I.187, H:L.189, H:A.251 Water bridges: H:K.161, H:S.249 Salt bridges: H:K.161, H:H.180, H:K.291 pi-Stacking: H:F.253

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sun, X. et al., Pyrazinamide and derivatives block ethylene biosynthesis by inhibiting ACC oxidase. Nat Commun (2017)

Release Date

2017-05-10

Peptides

1-aminocyclopropane-1-carboxylate oxidase 2: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

1-aminocyclopropane-1-carboxylate oxidase 2

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