SMTL ID : 5gjs.1

Crystal structure of H1 hemagglutinin from A/California/04/2009 in complex with a neutralizing antibody 3E1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-3-3-3-3-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 7 residues within 4Å: Chain A: N.66, E.68, D.88, N.89, C.92, P.139, R.223 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 7 residues within 4Å: Chain E: N.66, E.68, D.88, N.89, C.92, P.139, R.223 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 7 residues within 4Å: Chain I: N.66, E.68, D.88, N.89, C.92, P.139, R.223 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: D.276, N.278 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.276 NAG.4: 2 residues within 4Å: Chain E: D.276, N.278 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:D.276 NAG.6: 2 residues within 4Å: Chain I: D.276, N.278 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:D.276

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, W. et al., Human antibody 3E1 targets the HA stem region of H1N1 and H5N6 influenza A viruses. Nat Commun (2016)

Release Date

2016-12-07

Peptides

Hemagglutinin: AEI
Hemagglutinin: BFJ
light chain of human neutralizing antibody 3E1: CGK
heavy chain of human neutralizing antibody 3E1: DHL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

B
B

F
B

J
B

C
L

G
L

K
L

D
H

H
H

L
H

Hemagglutinin

Hemagglutinin

light chain of human neutralizing antibody 3E1

heavy chain of human neutralizing antibody 3E1

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