SMTL ID : 5gjw.1

Structure of the mammalian voltage-gated calcium channel Cav1.1 complex for ClassII map

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 1 residues within 4Å: Chain E: N.350 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 2 residues within 4Å: Chain E: E.82, N.615 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 4 residues within 4Å: Chain E: L.593, F.897, N.898, F.985 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 2 residues within 4Å: Chain E: N.678, E.681 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.3: 5 residues within 4Å: Chain E: R.116, S.121, N.186, S.189, A.190 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.4: 6 residues within 4Å: Chain E: Q.110, W.115, N.470, T.472, K.482, L.487 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-NAG.7: 6 residues within 4Å: Chain E: D.45, L.49, T.52, I.729, G.731, N.827 No protein-ligand interaction detected (PLIP)

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.8: 1 residues within 4Å: Chain A: N.257 No protein-ligand interaction detected (PLIP) NAG.12: 1 residues within 4Å: Chain E: N.326 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.326 NAG.13: 1 residues within 4Å: Chain E: N.891 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.891 NAG.14: 1 residues within 4Å: Chain E: N.94 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:E.201, E:E.201 NAG.15: 3 residues within 4Å: Chain E: R.591, K.604, N.606 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:K.604 Hydrogen bonds: E:R.591, E:N.606 NAG.16: 3 residues within 4Å: Chain E: F.783, N.784, R.876 No protein-ligand interaction detected (PLIP) NAG.17: 2 residues within 4Å: Chain E: N.1001, C.1027 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.1001 NAG.18: 3 residues within 4Å: Chain E: I.892, S.893, N.988 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:I.892

3 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.9: 6 residues within 4Å: Chain A: E.292, E.614, F.1013, E.1014, G.1322 Ligands: CA.10 No protein-ligand interaction detected (PLIP) CA.10: 1 residues within 4Å: Ligands: CA.9 No protein-ligand interaction detected (PLIP) CA.11: 4 residues within 4Å: Chain A: D.78 Chain E: S.263, S.265, T.333 1 PLIP interactions: 1 interactions with chain E Metal complexes: E:S.265

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, J.P. et al., Structure of the voltage-gated calcium channel Cav1.1 at 3.6 angstrom resolution. Nature (2016)

Release Date

2016-09-14

Peptides

Voltage-dependent L-type calcium channel subunit alpha-1S: A
Voltage-dependent L-type calcium channel subunit beta-1: B
Voltage-dependent L-type calcium channel subunit beta-1: C
Voltage-dependent calcium channel gamma-1 subunit: D
Voltage-dependent calcium channel subunit alpha-2/delta-1: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
E

E
F

Membrane

We predict this structure to be a membrane protein.
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Voltage-dependent L-type calcium channel subunit alpha-1S

Voltage-dependent L-type calcium channel subunit beta-1

Voltage-dependent L-type calcium channel subunit beta-1

Voltage-dependent calcium channel gamma-1 subunit

Voltage-dependent calcium channel subunit alpha-2/delta-1

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