SMTL ID : 5gjx.1

Crystal structure of DUCK MHC I for 2.06 angstrom

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ARG- LEU- ILE- GLN- ASN- SER- ILE- THR- ILE: ARG-LEU-ILE-GLN-ASN-SER-ILE-THR-ILE(Non-covalent)

ARG-LEU-ILE-GLN-ASN-SER-ILE-THR-ILE.1: 25 residues within 4Å: Chain A: Y.10, Y.12, M.46, R.64, E.65, T.68, S.69, N.72, I.75, V.78, N.79, T.82, A.83, R.86, W.96, H.100, T.142, K.145, W.146, V.152, W.156, Y.159, T.163, W.167, Y.171 33 PLIP interactions: 33 interactions with chain A Hydrophobic interactions: A:Y.10, A:T.68, A:I.75, A:V.78, A:W.96, A:T.142, A:W.146, A:V.152, A:W.156, A:W.156, A:Y.159, A:Y.159, A:Y.159 Hydrogen bonds: A:R.64, A:E.65, A:N.79, A:T.142, A:K.145, A:Y.159, A:Y.159, A:Y.171 Water bridges: A:Y.12, A:E.65, A:E.65, A:N.72, A:N.72, A:N.72, A:N.79, A:R.86, A:R.86, A:K.145 Salt bridges: A:R.86, A:K.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, Y. et al., Structural Definition Of Duck MHC Class I For 2.06 Angstrom Explains its Resistance to Influenza A virus. To Be Published

Release Date

2017-05-10

Peptides

MHC class I antigen: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MHC class I antigen

Beta-2-microglobulin

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