SMTL ID : 5gjy.1

Crystal structure of DUCK MHC CLASS I for 1.71 angstrom

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MET- VAL- LEU- ILE- ARG- MET- ILE: MET-VAL-MET-GLU-LEU-ILE-ARG-MET-ILE(Non-covalent)

MET-VAL-LEU-ILE-ARG-MET-ILE.1: 22 residues within 4Å: Chain A: Y.10, Y.12, Y.61, E.65, N.72, I.75, F.76, N.79, T.82, R.86, W.96, H.100, T.142, K.145, W.146, E.149, V.152, Q.155, W.156, Y.159, W.167, Y.171 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:Y.10, A:Y.12, A:I.75, A:F.76, A:T.82, A:W.96, A:T.142, A:W.146, A:W.156, A:W.156, A:Y.159, A:W.167 Hydrogen bonds: A:E.65, A:N.79, A:N.79, A:T.142, A:Q.155, A:Y.159, A:Y.171 Water bridges: A:R.86, A:Q.113, A:Q.113, A:K.145, A:Q.155 Salt bridges: A:R.86, A:K.145, A:E.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, Y. et al., Structural Definition Of Duck MHC Class I Explains the Resistance to Influenza A virus. To Be Published

Release Date

2017-05-10

Peptides

MHC class I antigen: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MHC class I antigen

Beta-2-microglobulin

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