SMTL ID : 5gkp.1

Crystal structure of the EndoG worm homologue CPS-6 H148A/F122A in complex with DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x DT- DT- DT- DT- DT: DNA (5'-D(*TP*TP*TP*TP*T)-3')(Non-covalent)

DT-DT-DT-DT-DT.1: 19 residues within 4Å: Chain A: R.64, K.65, K.87, C.88, S.89, F.91, D.92, R.93, G.94, A.95, A.98, A.99, G.100, N.127, R.128, N.132, E.135, R.139 Ligands: MG.3 Protein-ligand interaction information (PLIP) not available DT-DT-DT-DT-DT.2: 17 residues within 4Å: Chain B: R.64, K.87, C.88, F.91, D.92, R.93, G.94, A.95, A.98, A.99, G.100, N.127, R.128, N.132, E.135, R.139 Ligands: MG.4 Protein-ligand interaction information (PLIP) not available

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 8 residues within 4Å: Chain A: G.94, A.95, Q.121, N.127, W.131, E.135 Ligands: DT-DT-DT-DT-DT.1, DT-DT-DT-DT-DT.1 No protein-ligand interaction detected (PLIP) MG.4: 7 residues within 4Å: Chain B: G.94, A.95, N.127, W.131, E.135 Ligands: DT-DT-DT-DT-DT.2, DT-DT-DT-DT-DT.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, J.L. et al., Crystal structure of endonuclease G in complex with DNA reveals how it nonspecifically degrades DNA as a homodimer. Nucleic Acids Res. (2016)

Release Date

2016-11-23

Peptides

Endonuclease G, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Endonuclease G, mitochondrial

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