SMTL ID : 5gkq.1 (2 other biounits)

Structure of PL6 family alginate lyase AlyGC mutant-R241A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.57 Å

Oligo State

homo-dimer

Ligands

1 x BEM- BEM- BEM- BEM: beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid

BEM-BEM-BEM-BEM.1: 13 residues within 4Å: Chain A: Q.122, R.153, N.180, R.186, S.190, E.214, K.219, H.241, N.301, R.302, Y.303, R.332 Ligands: CA.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.301, A:Y.303, A:R.332 Salt bridges: A:R.302

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: N.180, E.183, E.212, E.214, S.632 Ligands: BEM-BEM-BEM-BEM.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.212, A:E.212 CA.3: 5 residues within 4Å: Chain B: N.180, G.181, E.183, E.212, S.632 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, F. et al., Novel Molecular Insights into the Catalytic Mechanism of Marine Bacterial Alginate Lyase AlyGC from Polysaccharide Lyase Family 6. J. Biol. Chem. (2017)

Release Date

2017-02-08

Peptides

AlyGC mutant - R241A: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

AlyGC mutant - R241A

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