SMTL ID : 5gll.2 (1 other biounit)

Crystal structure of CoXyl43, GH43 beta-xylosidase/alpha-arabinofuranosidase from a compostmicrobial metagenome, calcium-bound form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain A: S.34, H.294 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.294, H2O.1, H2O.2, H2O.5, H2O.6

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 1 residues within 4Å: Chain A: T.338 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.338, A:T.338, A:T.338

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 9 residues within 4Å: Chain A: D.32, M.65, W.100, A.101, D.152, E.243, T.292, R.321 Ligands: ACT.4 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:A.101, A:D.152, A:E.243, A:R.321, A:R.321 Water bridges: A:T.292, A:H.294

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 7 residues within 4Å: Chain A: D.58, G.60, F.63, W.171, G.172, E.243 Ligands: GOL.3 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.63 Hydrogen bonds: A:G.172 Water bridges: A:G.173, A:G.173 ACT.5: 3 residues within 4Å: Chain A: I.289, S.312, Y.342 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.289 Salt bridges: A:K.324

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Matsuzawa, T. et al., Crystal structure of metagenomic beta-xylosidase/ alpha-l-arabinofuranosidase activated by calcium. J. Biochem. (2017)

Release Date

2017-03-15

Peptides

Glycoside hydrolase family 43: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Glycoside hydrolase family 43

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