- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)
- 6 x TEX: (2S,5S)-9-[(3R)-3,7-dimethylocta-1,6-dien-3-yl]-5-(hydroxymethyl)-1-methyl-2-(propan-2-yl)-1,2,4,5,6,8-hexahydro-3H-[1,4]diazonino[7,6,5-cd]indol-3-one(Non-covalent)
TEX.2: 20 residues within 4Å:- Chain A: E.153, C.156, H.157, L.180, E.181, S.182, F.196, Y.200, L.232, T.235, M.236, L.273, T.277, F.279
- Chain B: Y.21, Y.28, L.32, V.36, H.37, C.38
15 PLIP interactions:12 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: A:F.196, A:L.232, A:L.232, A:T.235, A:L.273, A:F.279, B:Y.28, B:L.32, B:V.36
- Hydrogen bonds: A:E.153, A:C.156, A:E.181, A:S.182, A:S.182
- pi-Stacking: A:Y.200
TEX.4: 21 residues within 4Å:- Chain A: Y.21, Y.28, L.32, V.36, H.37, C.38
- Chain B: E.153, C.156, H.157, L.180, E.181, S.182, F.196, Y.200, P.205, L.232, T.235, M.236, L.273, T.277, F.279
13 PLIP interactions:3 interactions with chain A, 10 interactions with chain B- Hydrophobic interactions: A:Y.28, A:L.32, A:V.36, B:F.196, B:L.232, B:L.232, B:T.235, B:L.273, B:F.279
- Hydrogen bonds: B:E.153, B:C.156, B:S.182
- pi-Stacking: B:Y.200
TEX.6: 19 residues within 4Å:- Chain C: E.153, C.156, H.157, L.180, E.181, S.182, F.196, Y.200, L.232, T.235, M.236, L.273, F.279
- Chain D: Y.21, Y.28, L.32, V.36, H.37, C.38
12 PLIP interactions:9 interactions with chain C, 3 interactions with chain D- Hydrophobic interactions: C:F.196, C:Y.200, C:L.232, C:T.235, C:L.273, C:F.279, D:Y.28, D:L.32, D:V.36
- Hydrogen bonds: C:E.153, C:C.156
- pi-Stacking: C:Y.200
TEX.8: 19 residues within 4Å:- Chain C: Y.21, Y.28, L.32, V.36, H.37, C.38
- Chain D: E.153, C.156, H.157, L.180, E.181, S.182, F.196, Y.200, L.232, T.235, M.236, L.273, F.279
12 PLIP interactions:10 interactions with chain D, 2 interactions with chain C- Hydrophobic interactions: D:F.196, D:Y.200, D:L.232, D:T.235, D:L.273, D:F.279, C:Y.28, C:L.32
- Hydrogen bonds: D:E.153, D:C.156, D:S.182
- pi-Stacking: D:Y.200
TEX.10: 19 residues within 4Å:- Chain E: E.153, C.156, H.157, L.180, E.181, S.182, F.196, Y.200, L.232, M.236, L.273, T.277, F.279
- Chain F: Y.21, Y.28, L.32, V.36, H.37, C.38
16 PLIP interactions:14 interactions with chain E, 2 interactions with chain F- Hydrophobic interactions: E:F.196, E:Y.200, E:L.232, E:L.232, E:L.273, E:F.279, F:Y.28, F:L.32
- Hydrogen bonds: E:E.153, E:E.153, E:L.155, E:C.156, E:L.180, E:S.182, E:S.182
- pi-Stacking: E:Y.200
TEX.12: 20 residues within 4Å:- Chain E: Y.21, Y.28, L.32, V.36, H.37, C.38
- Chain F: E.153, C.156, H.157, L.180, E.181, S.182, F.196, Y.200, L.232, T.235, M.236, L.273, T.277, F.279
13 PLIP interactions:3 interactions with chain E, 10 interactions with chain F- Hydrophobic interactions: E:Y.28, E:L.32, E:V.36, F:F.196, F:L.232, F:T.235, F:L.273, F:F.279
- Hydrogen bonds: F:E.153, F:C.156, F:E.181, F:S.182
- pi-Stacking: F:Y.200
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yu, F. et al., Crystal structure and enantioselectivity of terpene cyclization in SAM-dependent methyltransferase TleD. Biochem.J. (2016)
- Release Date
- 2016-09-28
- Peptides
- O-methylransferase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)
- 6 x TEX: (2S,5S)-9-[(3R)-3,7-dimethylocta-1,6-dien-3-yl]-5-(hydroxymethyl)-1-methyl-2-(propan-2-yl)-1,2,4,5,6,8-hexahydro-3H-[1,4]diazonino[7,6,5-cd]indol-3-one(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yu, F. et al., Crystal structure and enantioselectivity of terpene cyclization in SAM-dependent methyltransferase TleD. Biochem.J. (2016)
- Release Date
- 2016-09-28
- Peptides
- O-methylransferase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F