SMTL ID : 5gmq.1

Structure of MERS-CoV RBD in complex with a fully human antibody MCA1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- MAN- MAN: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-MAN-MAN.1: 5 residues within 4Å: Chain A: S.51, F.53, S.54, V.55, N.56 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.54, A:N.56, A:S.51

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain B: F.111, D.112 Chain C: R.46, L.47, A.56, I.59 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:L.47, B:W.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Z. et al., Human Neutralizing Monoclonal Antibody Inhibition of Middle East Respiratory Syndrome Coronavirus Replication in the Common Marmoset. J. Infect. Dis. (2017)

Release Date

2017-05-31

Peptides

S protein: A
MCA1 heavy chain: B
MCA1 light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

S protein

MCA1 heavy chain

MCA1 light chain