SMTL ID : 5gnb.1

Crystal Structure of the Receptor Binding Domain of the Spike Glycoprotein of Human Betacoronavirus HKU1 (HKU1 1A-CTD, 2.3 angstrom, native-SAD phasing)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: F.30, I.126, N.127 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.30 NAG.2: 4 residues within 4Å: Chain A: N.164, N.165, T.166, N.194 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:T.166 Hydrogen bonds: A:N.164, A:T.166, A:T.166 Water bridges: A:N.164 NAG.3: 1 residues within 4Å: Chain A: N.148 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.148 NAG.4: 5 residues within 4Å: Chain A: D.20, N.49, T.52, N.301, D.302 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.49, A:T.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ou, X. et al., Crystal structure of the receptor binding domain of the spike glycoprotein of human betacoronavirus HKU1. Nat Commun (2017)

Release Date

2017-06-07

Peptides

Spike glycoprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Spike glycoprotein

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