SMTL ID : 5gol.1

Structure of acetyl-Coenzyme A synthase Alpha subunit C-terminal domain F598H mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

homo-tetramer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: S.1, C.2, G.3, C.4, H.5, E.6 Chain D: H.5 Ligands: NI.2 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain D Hydrogen bonds: A:S.1, A:G.3, A:C.4, A:H.5 Water bridges: A:H.5 Salt bridges: A:H.5, D:H.5 SO4.6: 6 residues within 4Å: Chain B: S.1, C.2, G.3, C.4, H.5 Ligands: NI.4 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.1, B:G.3, B:C.4, B:H.5 Salt bridges: B:H.5 SO4.7: 6 residues within 4Å: Chain C: S.1, C.2, G.3, C.4, H.5, E.6 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:S.1, C:G.3, C:C.4, C:H.5 Salt bridges: C:H.5 SO4.8: 7 residues within 4Å: Chain A: H.5 Chain D: S.1, C.2, G.3, C.4, H.5 Ligands: NI.3 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain D Salt bridges: A:H.5, D:H.5 Hydrogen bonds: D:G.3, D:C.4, D:H.5

4 x NI: NICKEL (II) ION(Non-covalent)

NI.2: 5 residues within 4Å: Chain A: S.1, C.2, G.3 Chain D: H.5 Ligands: SO4.1 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain D Metal complexes: A:C.2, D:H.5 NI.3: 6 residues within 4Å: Chain A: H.5, T.57 Chain D: S.1, C.2, G.3 Ligands: SO4.8 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain D Metal complexes: A:H.5, D:C.2 NI.4: 5 residues within 4Å: Chain B: S.1, C.2, G.3, C.4 Ligands: SO4.6 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:C.2 NI.5: 1 residues within 4Å: Chain B: H.5 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yuan, H. et al., Structure of acetyl-Coenzyme A synthase Alpha subunit C-terminal domain F598H mutant. To Be Published

Release Date

2017-09-06

Peptides

Carbon monoxide dehydrogenase/acetyl-CoA synthase subunit alpha: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Carbon monoxide dehydrogenase/acetyl-CoA synthase subunit alpha

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