SMTL ID : 5gom.1

Truncated mitofusin-1, transition-like state

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 19 residues within 4Å: Chain A: R.90, T.91, S.92, S.93, G.94, K.95, S.96, S.97, S.110, G.111, I.112, H.114, N.244, R.245, D.247, S.291, A.292, K.293 Chain B: E.252 18 PLIP interactions: 17 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.92, A:S.93, A:G.94, A:K.95, A:S.96, A:S.96, A:S.97, A:S.97, A:N.244, A:R.245, A:R.245, A:S.291, A:K.293, B:E.252 Salt bridges: A:K.95, A:H.114, A:H.114, A:D.247 GDP.3: 18 residues within 4Å: Chain A: E.216 Chain B: R.90, S.92, S.93, G.94, K.95, S.96, S.97, S.110, H.114, D.185, N.244, R.245, D.247, S.291, A.292, K.293, L.313 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:S.92, B:S.93, B:G.94, B:K.95, B:S.96, B:S.96, B:S.97, B:D.185, B:N.244, B:R.245, B:R.245, B:S.291, B:K.293 Salt bridges: B:K.95, B:H.114, B:D.247

1 x DTT: 2,3-DIHYDROXY-1,4-DITHIOBUTANE(Non-covalent)

DTT.2: 2 residues within 4Å: Chain A: W.104, K.173 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cao, Y.L. et al., MFN1 structures reveal nucleotide-triggered dimerization critical for mitochondrial fusion. Nature (2017)

Release Date

2017-02-01

Peptides

Mitofusin-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Mitofusin-1

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