SMTL ID : 5gox.1

Eukaryotic Rad50 Functions as A Rod-shaped Dimer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.41 Å

Oligo State

homo-dimer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: F.50, D.51, V.52, G.54 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.50, A:G.54 GOL.2: 5 residues within 4Å: Chain A: G.54, S.55, Q.56, D.57, D.61 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.56, A:Q.56, A:D.57, A:D.61 GOL.4: 3 residues within 4Å: Chain B: D.120, S.123, K.124 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.123, B:K.124

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: C.101, C.104 Chain B: C.101, C.104 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Metal complexes: B:C.101, B:C.104, A:C.101, A:C.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, Y.B. et al., Eukaryotic Rad50 functions as a rod-shaped dimer. Nat. Struct. Mol. Biol. (2017)

Release Date

2017-02-01

Peptides

DNA repair protein RAD50: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DNA repair protein RAD50