SMTL ID : 5gp4.2 (1 other biounit)

Lactobacillus brevis CGMCC 1306 Glutamate decarboxylase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.16 Å

Oligo State

homo-hexamer

Ligands

6 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)

PLP.1: 15 residues within 4Å: Chain A: G.125, S.126, S.127, Q.166, C.168, I.211, G.213, T.215, D.246, A.248, S.276, H.278, K.279 Chain B: F.320, S.321 17 PLIP interactions: 14 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:Q.166, A:I.211, A:T.215, A:A.248, A:K.279 Hydrogen bonds: A:S.126, A:S.127, A:S.127, A:S.276, A:S.276, A:K.279, B:S.321 Water bridges: A:Q.166, B:F.320, B:F.320 Salt bridges: A:H.278, A:K.279 PLP.2: 15 residues within 4Å: Chain A: F.320, S.321 Chain B: G.125, S.126, S.127, Q.166, C.168, I.211, G.213, T.215, D.246, A.248, S.276, H.278, K.279 13 PLIP interactions: 11 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:Q.166, B:I.211, B:T.215, B:A.248 Hydrogen bonds: B:S.126, B:S.127, B:S.276, B:K.279, A:F.320, A:S.321 Water bridges: B:Q.166 Salt bridges: B:H.278, B:K.279 PLP.3: 15 residues within 4Å: Chain C: G.125, S.126, S.127, Q.166, C.168, I.211, G.213, T.215, D.246, A.248, S.276, H.278, K.279 Chain F: F.320, S.321 13 PLIP interactions: 11 interactions with chain C, 2 interactions with chain F Hydrophobic interactions: C:Q.166, C:I.211, C:T.215, C:A.248 Hydrogen bonds: C:S.126, C:S.127, C:S.276, C:K.279, F:F.320, F:S.321 Water bridges: C:Q.166 Salt bridges: C:H.278, C:K.279 PLP.4: 15 residues within 4Å: Chain D: G.125, S.126, S.127, Q.166, C.168, I.211, G.213, T.215, D.246, A.248, S.276, H.278, K.279 Chain E: F.320, S.321 16 PLIP interactions: 3 interactions with chain E, 13 interactions with chain D Hydrogen bonds: E:S.321, D:S.126, D:S.127, D:S.127, D:S.276, D:S.276 Water bridges: E:F.320, E:F.320, D:Q.166 Hydrophobic interactions: D:Q.166, D:I.211, D:T.215, D:A.248, D:K.279 Salt bridges: D:H.278, D:K.279 PLP.5: 15 residues within 4Å: Chain D: F.320, S.321 Chain E: G.125, S.126, S.127, Q.166, C.168, I.211, G.213, T.215, D.246, A.248, S.276, H.278, K.279 13 PLIP interactions: 11 interactions with chain E, 2 interactions with chain D Hydrophobic interactions: E:Q.166, E:I.211, E:T.215, E:A.248 Hydrogen bonds: E:S.126, E:S.127, E:S.276, E:K.279, D:F.320, D:S.321 Water bridges: E:Q.166 Salt bridges: E:H.278, E:K.279 PLP.6: 15 residues within 4Å: Chain C: F.320, S.321 Chain F: G.125, S.126, S.127, Q.166, C.168, I.211, G.213, T.215, D.246, A.248, S.276, H.278, K.279 12 PLIP interactions: 2 interactions with chain C, 10 interactions with chain F Hydrogen bonds: C:F.320, C:S.321, F:S.126, F:S.127, F:S.276 Hydrophobic interactions: F:Q.166, F:I.211, F:T.215, F:A.248 Water bridges: F:Q.166 Salt bridges: F:H.278, F:K.279

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, J. et al., Lactobacillus brevis CGMCC 1306 glutamate decarboxylase: Crystal structure and functional analysis. Biochem. Biophys. Res. Commun. (2018)

Release Date

2017-08-02

Peptides

Glutamate decarboxylase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
A

C
B

D
C

E
A

F
B

Glutamate decarboxylase

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