SMTL ID : 5gpg.1

Co-crystal structure of the FK506 binding domain of human FKBP25, Rapamycin and the FRB domain of human mTOR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

hetero-1-1-mer

Ligands

1 x RAP: RAPAMYCIN IMMUNOSUPPRESSANT DRUG(Non-covalent)

RAP.1: 23 residues within 4Å: Chain A: Y.28, F.38, D.39, L.55, G.62, K.63, V.64, I.65, W.68, Y.91, A.99, I.101, F.109 Chain B: L.12, E.13, S.16, R.17, F.20, T.79, W.82, D.83, Y.86, F.89 28 PLIP interactions: 14 interactions with chain A, 14 interactions with chain B Hydrophobic interactions: A:Y.28, A:L.55, A:V.64, A:W.68, A:W.68, A:A.99, A:I.101, B:L.12, B:F.20, B:F.20, B:F.20, B:F.20, B:W.82, B:W.82, B:Y.86, B:Y.86, B:Y.86, B:F.89, B:F.89, B:F.89 Hydrogen bonds: A:Y.28, A:D.39, A:D.39, A:I.65, A:Y.91 Water bridges: A:G.62, A:K.63, B:E.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, S.Y. et al., Proximity-Directed Labeling Reveals a New Rapamycin-Induced Heterodimer of FKBP25 and FRB in Live Cells. Acs Cent.Sci. (2016)

Release Date

2016-10-12

Peptides

Peptidyl-prolyl cis-trans isomerase FKBP3: A
Serine/threonine-protein kinase mTOR: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peptidyl-prolyl cis-trans isomerase FKBP3

Serine/threonine-protein kinase mTOR