SMTL ID : 5gpp.2 (1 other biounit)

Crystal structure of zebrafish ASC PYD domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 12 residues within 4Å: Chain A: D.15, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, W.231, W.341 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.63, A:R.67, A:E.154, A:Y.156

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: G.401, K.411 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.401, A:K.411 Salt bridges: A:K.411 SO4.3: 2 residues within 4Å: Chain A: N.202, H.204 3 PLIP interactions: 3 interactions with chain A Water bridges: A:D.198, A:N.202 Salt bridges: A:H.204 SO4.4: 2 residues within 4Å: Chain A: R.404, R.408 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.404, A:R.408

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 3 residues within 4Å: Chain A: R.371, A.372, A.373 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:R.371, A:A.373 Hydrogen bonds: A:A.372, A:A.373 ACT.6: 1 residues within 4Å: Chain A: Y.18 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Y. et al., Functional and structural characterization of zebrafish ASC. FEBS J. (2018)

Release Date

2017-08-09

Peptides

Maltose-binding periplasmic protein,Apoptosis-associated speck-like protein containing a CARD: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Maltose-binding periplasmic protein,Apoptosis-associated speck-like protein containing a CARD

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