SMTL ID : 5gqq.1

Structure of ALG-2/HEBP2 Complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-2-2-mer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain C: D.15, D.17, S.19, V.21, E.26 Ligands: CL.4 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:D.15, C:D.17, C:S.19, C:V.21, C:E.26 CA.2: 5 residues within 4Å: Chain C: D.82, D.84, S.86, M.88, E.93 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:D.82, C:D.84, C:S.86, C:M.88, C:E.93 CA.3: 4 residues within 4Å: Chain C: D.148, D.150, D.152, W.154 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.148, C:D.150, C:D.152, C:W.154 CA.5: 6 residues within 4Å: Chain D: D.15, D.17, S.19, V.21, E.26 Ligands: CL.8 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:D.15, D:D.17, D:S.19, D:V.21, D:E.26 CA.6: 5 residues within 4Å: Chain D: D.82, D.84, S.86, M.88, E.93 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:D.82, D:D.84, D:S.86, D:M.88, D:E.93 CA.7: 4 residues within 4Å: Chain D: D.148, D.150, D.152, W.154 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:D.150, D:W.154

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 7 residues within 4Å: Chain B: Q.130, E.134 Chain C: D.17, S.19, V.21, E.26 Ligands: CA.1 Ligand excluded by PLIP CL.8: 8 residues within 4Å: Chain A: Q.130, E.134 Chain D: D.17, S.19, V.21, S.23, E.26 Ligands: CA.5 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ma, J. et al., Structural and Functional Study of Apoptosis-linked Gene-2Heme-binding Protein 2 Interactions in HIV-1 Production. J. Biol. Chem. (2016)

Release Date

2016-11-02

Peptides

Heme-binding protein 2: AB
Programmed cell death protein 6: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Heme-binding protein 2

Programmed cell death protein 6