SMTL ID : 5gt4.1

Crystal structure of the human vitamin D receptor ligand binding domain complexed with (1R,2S,3R,5Z,7E,14beta,17alpha)-2-cyanopropoxy-9,10-secocholesta-5,7,10-triene-1,3,25-triol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

monomer

Ligands

1 x 2KB: 4-{[(1R,2S,3R,5Z,7E,14beta,17alpha)-1,3,25-trihydroxy-9,10-secocholesta-5,7,10-trien-2-yl]oxy}butanenitrile(Non-covalent)

2KB.1: 21 residues within 4Å: Chain A: Y.26, D.27, Y.30, F.33, L.59, L.65, V.66, S.69, I.103, R.106, S.107, S.110, W.118, C.120, V.132, H.137, L.141, L.145, H.229, Y.233, V.250 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:Y.26, A:Y.30, A:L.59, A:L.65, A:V.66, A:W.118, A:V.132, A:L.141, A:L.145, A:V.250 Hydrogen bonds: A:Y.26, A:D.27, A:S.69, A:R.106, A:S.110, A:S.110, A:H.229 Water bridges: A:Y.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Takimoto-Kamimura, M., Crystal structure of the human vitamin D receptor ligand binding domain complexed with (1R,2S,3R,5Z,7E,14beta,17alpha)-2-cyanopropoxy-9,10-secocholesta-5,7,10-triene-1,3,25-triol. To Be Published

Release Date

2016-11-09

Peptides

Vitamin D3 receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vitamin D3 receptor

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