SMTL ID : 5gtq.1

Luciferin-regenerating enzyme at cryogenic temperature

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.13 Å

Oligo State

monomer

Ligands

2 x HG: MERCURY (II) ION(Non-covalent)

HG.1: 4 residues within 4Å: Chain A: F.42, C.55, W.87 Ligands: HG.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.55 HG.2: 5 residues within 4Å: Chain A: I.64, F.74, L.85, W.87 Ligands: HG.1 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: E.21, N.163, D.215 Ligands: MPD.5 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.21, A:D.215, H2O.3, H2O.3, H2O.8

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.4: 3 residues within 4Å: Chain A: P.211, S.283, F.284 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.284 Water bridges: A:G.212, A:Q.231, A:R.234, A:R.234 MPD.5: 6 residues within 4Å: Chain A: L.134, N.163, S.179, D.215, F.230 Ligands: MG.3 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.134, A:F.230, A:F.230, A:F.230 Hydrogen bonds: A:N.163, A:S.179 Water bridges: A:T.37, A:N.113, A:D.215, A:D.215

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 9 residues within 4Å: Chain A: D.26, T.29, Y.33, P.66, S.70, P.71, G.72, R.73, F.74 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.26, A:T.29, A:G.72, A:R.73, A:R.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamashita, K., Luciferin-regenerating enzyme at cryogenic temperature. To Be Published

Release Date

2016-11-09

Peptides

Luciferin regenerating enzyme: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Luciferin regenerating enzyme

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