SMTL ID : 5gtz.1

Crystal structure of EGFR 696-1022 T790M in complex with JTS-1-39

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

1 x 81C: N-[5-[[5-chloranyl-4-[(2-propan-2-ylsulfonylphenyl)amino]pyrimidin-2-yl]amino]-2-(4-ethylpiperazin-1-yl)-4-methoxy-phenyl]prop-2-enamide(Covalent)

81C.1: 14 residues within 4Å: Chain A: L.27, V.35, A.52, K.54, E.71, M.99, Q.100, L.101, M.102, P.103, G.105, C.106, D.109, L.153 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.27, A:L.27, A:V.35, A:V.35, A:K.54 Hydrogen bonds: A:M.102, A:M.102, A:C.106

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) EDO.3: 2 residues within 4Å: Chain A: E.276, Y.287 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.276, A:Y.287 EDO.4: 3 residues within 4Å: Chain A: M.254, I.255, K.258 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.258 EDO.5: 4 residues within 4Å: Chain A: N.125, S.278, A.281, R.282 No protein-ligand interaction detected (PLIP)

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 4 residues within 4Å: Chain A: R.85, L.87, A.322, Y.325 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: G.30, V.35 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain A: P.42, E.43, G.44 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain A: T.19, K.22, I.41 Ligand excluded by PLIP CL.10: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yan, X.E. et al., Crystal structure of EGFR 696-1022 T790M in complex with JTS-1-39. To Be Published

Release Date

2017-09-06

Peptides

Epidermal growth factor receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Epidermal growth factor receptor

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