SMTL ID : 5gu4.2 (1 other biounit)

rRNA N-glycosylase RTA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x GLY- PHE- GLY- LEU- PHE- ASP: GLY-PHE-GLY-LEU-PHE-ASP(Non-covalent)

GLY-PHE-GLY-LEU-PHE-ASP.1: 11 residues within 4Å: Chain A: Q.216, Y.217, S.237, L.241, Q.267, R.268, R.269, F.274, I.281, P.284, I.285 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.217, A:Y.217, A:L.241, A:F.274, A:F.274, A:I.285 Hydrogen bonds: A:R.268, A:R.269 Water bridges: A:N.270 Salt bridges: A:R.269 pi-Stacking: A:Y.217

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 1 residues within 4Å: Chain A: N.229 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.229

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shi, W.W. et al., Crystal Structure of Ribosome-Inactivating Protein Ricin A Chain in Complex with the C-Terminal Peptide of the Ribosomal Stalk Protein P2. Toxins (2016)

Release Date

2016-11-02

Peptides

Ricin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Ricin

Related Entries With Identical Sequence