SMTL ID : 5gvv.1

Crystal structure of the glycosyltransferase GlyE in Streptococcus pneumoniae TIGR4

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: D.106, D.108, H.227 Ligands: UDP.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.106, A:D.108, A:D.108, A:H.227 MN.3: 4 residues within 4Å: Chain B: D.106, D.108, H.227 Ligands: UDP.4 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.106, B:D.108, B:D.108, B:H.227

2 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.2: 14 residues within 4Å: Chain A: A.11, G.12, D.13, Y.16, T.87, R.90, D.106, S.107, D.108, H.227, I.229, S.230, K.233 Ligands: MN.1 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:A.11, A:D.13, A:D.13, A:D.13, A:T.87, A:S.107, A:S.107, A:D.108, A:S.230 Water bridges: A:A.11, A:R.90, A:S.230, A:K.233 Salt bridges: A:H.227, A:K.233, A:K.233 pi-Stacking: A:Y.16 UDP.4: 15 residues within 4Å: Chain B: A.11, G.12, D.13, Y.16, M.86, T.87, R.90, D.106, S.107, D.108, H.227, I.229, S.230, K.233 Ligands: MN.3 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:A.11, B:D.13, B:D.13, B:T.87, B:S.107, B:D.108, B:D.108, B:S.230 Water bridges: B:R.90, B:R.90 Salt bridges: B:H.227, B:K.233, B:K.233 pi-Stacking: B:Y.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, Y.L. et al., Defining the enzymatic pathway for polymorphic O-glycosylation of the pneumococcal serine-rich repeat protein PsrP. J. Biol. Chem. (2017)

Release Date

2017-03-01

Peptides

Glycosyl transferase family 8: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
F

Glycosyl transferase family 8

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