SMTL ID : 5gxo.2 (1 other biounit)

Discovery of a compound that activates SIRT3 to deacetylate Manganese Superoxide Dismutase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: H.26, H.74, D.159, H.163 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.26, A:H.74, A:D.159, A:H.163, H2O.1 MN.2: 4 residues within 4Å: Chain B: H.26, H.74, D.159, H.163 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.26, B:H.74, B:D.159, B:H.163, H2O.5 MN.3: 4 residues within 4Å: Chain C: H.26, H.74, D.159, H.163 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.26, C:H.74, C:D.159, C:H.163, H2O.7 MN.4: 4 residues within 4Å: Chain D: H.26, H.74, D.159, H.163 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.26, D:H.74, D:D.159, D:H.163, H2O.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lu, J. et al., A small molecule activator of SIRT3 promotes deacetylation and activation of manganese superoxide dismutase. Free Radic. Biol. Med. (2017)

Release Date

2017-08-09

Peptides

Superoxide dismutase [Mn], mitochondrial: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Superoxide dismutase [Mn], mitochondrial

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