SMTL ID : 5gyz.1

luciferase AMP/7-cy-L complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x 7BV: (4S)-2-[6-(azepan-1-yl)-1,3-benzothiazol-2-yl]-4,5-dihydro-1,3-thiazole-4-carboxylic acid(Non-covalent)

7BV.1: 21 residues within 4Å: Chain A: R.215, F.224, G.243, F.244, T.248, L.283, A.310, S.311, G.312, G.313, R.334, Q.335, G.336, G.338, L.339, T.340, T.343, S.344, A.345, I.348 Ligands: AMP.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.244, A:F.244, A:T.248, A:A.310, A:R.334, A:A.345, A:I.348 Hydrogen bonds: A:T.340, A:T.340

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.2: 12 residues within 4Å: Chain A: G.313, A.314, P.315, Q.335, G.336, Y.337, G.338, L.339, T.340, V.359, D.419 Ligands: 7BV.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.313, A:Q.335, A:G.338, A:T.340, A:T.340, A:D.419

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 9 residues within 4Å: Chain A: S.79, E.80, N.81, S.82, D.104, I.105, S.126, K.128, Y.263 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.80, A:N.81, A:D.104, A:S.126 Water bridges: A:K.128, A:K.128, A:K.128

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain A: E.268, L.269, R.272 Ligands: GOL.5, GOL.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.272, A:R.272 GOL.5: 4 residues within 4Å: Chain A: E.266, E.268 Ligands: GOL.4, GOL.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.266 GOL.6: 3 residues within 4Å: Chain A: E.268 Ligands: GOL.4, GOL.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.268

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chao, T.Z. et al., Structure of luciferase with AMP/7-cy-L at 2.4 Angstroms resolution. To Be Published

Release Date

2017-09-27

Peptides

Luciferin 4-monooxygenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Luciferin 4-monooxygenase