SMTL ID : 5gzf.1

Galectin-8 N-terminal domain carbohydrate recognition domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x BGC- GAL: beta-D-galactopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-GAL.1: 9 residues within 4Å: Chain A: R.48, H.68, N.70, R.72, V.80, N.82, W.89, E.92 Ligands: NA.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.72, A:R.72, A:E.92, A:R.48, A:R.48, A:R.72, A:N.82 Water bridges: A:R.62

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 5 residues within 4Å: Chain A: R.48, Q.50, R.62, W.89 Ligands: BGC-GAL.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.48, A:Q.50, A:Q.50, A:R.62, A:R.62

1 x NI: NICKEL (II) ION(Non-covalent)

NI.3: 2 residues within 4Å: Chain A: H.41, H.150 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.41, A:H.150, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Si, Y. et al., Crystallization of Galectin-8 Linker Reveals Intricate Relationship between the N-terminal Tail and the Linker. Int J Mol Sci (2016)

Release Date

2016-12-21

Peptides

Galectin-8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Galectin-8

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