SMTL ID : 5gzh.1 (1 other biounit)

Endo-beta-1,2-glucanase from Chitinophaga pinensis - ligand free form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 6 residues within 4Å: Chain A: E.443, H.444, H.445, H.446, H.449 Ligands: IOD.10 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.444, A:H.444 Water bridges: A:H.445

14 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 2 residues within 4Å: Chain A: R.99, K.102 Ligand excluded by PLIP IOD.3: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.4: 2 residues within 4Å: Chain A: P.357, E.358 Ligand excluded by PLIP IOD.5: 5 residues within 4Å: Chain A: N.68, Y.122, G.123, E.124 Ligands: IOD.6 Ligand excluded by PLIP IOD.6: 5 residues within 4Å: Chain A: N.65, D.66, N.68, V.69 Ligands: IOD.5 Ligand excluded by PLIP IOD.7: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.8: 2 residues within 4Å: Chain A: F.259 Ligands: IOD.13 Ligand excluded by PLIP IOD.9: 3 residues within 4Å: Chain A: W.194, K.199, W.200 Ligand excluded by PLIP IOD.10: 2 residues within 4Å: Chain A: H.449 Ligands: GLC-GLC.1 Ligand excluded by PLIP IOD.11: 3 residues within 4Å: Chain A: R.154, A.168, A.169 Ligand excluded by PLIP IOD.12: 2 residues within 4Å: Chain A: K.431, E.443 Ligand excluded by PLIP IOD.13: 4 residues within 4Å: Chain A: F.259, A.260, K.261 Ligands: IOD.8 Ligand excluded by PLIP IOD.14: 3 residues within 4Å: Chain A: G.132, Q.133, K.134 Ligand excluded by PLIP IOD.15: 1 residues within 4Å: Chain A: H.57 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abe, K. et al., Biochemical and structural analyses of a bacterial endo-beta-1,2-glucanase reveal a new glycoside hydrolase family. J. Biol. Chem. (2017)

Release Date

2017-03-15

Peptides

Endo-beta-1,2-glucanase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endo-beta-1,2-glucanase

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