SMTL ID : 5gzs.1

Structure of VC protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x ARG: ARGININE(Non-covalent)

ARG.1: 12 residues within 4Å: Chain A: E.11, F.40, N.57, I.58, T.59, R.64, E.77, T.101, T.102, Y.103, A.140, N.142 11 PLIP interactions: 10 interactions with chain A, 1 Ligand-Ligand interactions Hydrophobic interactions: A:F.40 Hydrogen bonds: A:N.57, A:N.57, A:T.59, A:E.77, A:T.102, R.1 Water bridges: A:E.77 Salt bridges: A:E.11, A:R.64, A:E.77 ARG.2: 12 residues within 4Å: Chain B: E.11, F.40, N.57, I.58, T.59, R.64, E.77, T.101, T.102, Y.103, A.140, N.142 11 PLIP interactions: 10 interactions with chain B, 1 Ligand-Ligand interactions Hydrophobic interactions: B:F.40 Hydrogen bonds: B:N.57, B:N.57, B:T.59, B:T.59, B:E.77, B:T.102, R.2 Salt bridges: B:E.11, B:R.64, B:E.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, M. et al., Structural studies of the periplasmic portion of the diguanylate cyclase CdgH from Vibrio cholerae. Sci Rep (2017)

Release Date

2017-08-16

Peptides

GGDEF family protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

GGDEF family protein