SMTL ID : 5gzy.1

The complex structure of D-2-haloacid dehalogenase with L-LA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.18 Å

Oligo State

homo-tetramer

Ligands

4 x 2OP: (2S)-2-HYDROXYPROPANOIC ACID(Non-covalent)

2OP.1: 10 residues within 4Å: Chain A: W.48, G.50, V.51, I.52, N.131, N.203, S.204, D.205, M.284, L.285 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.51, A:I.52 Hydrogen bonds: A:V.51, A:N.131, A:N.203, A:S.204 2OP.2: 9 residues within 4Å: Chain B: W.48, G.50, V.51, I.52, N.131, N.203, S.204, D.205, M.284 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:V.51, B:I.52 Hydrogen bonds: B:V.51, B:N.131, B:N.203, B:S.204, B:D.205 2OP.3: 11 residues within 4Å: Chain C: W.48, G.50, V.51, I.52, N.131, N.203, S.204, D.205, M.284, L.285, L.288 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:V.51, C:I.52 Hydrogen bonds: C:W.48, C:V.51, C:N.131, C:N.203, C:S.204 2OP.4: 11 residues within 4Å: Chain D: W.48, G.50, V.51, I.52, N.131, N.203, S.204, D.205, M.284, L.285, L.288 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:V.51, D:I.52 Hydrogen bonds: D:V.51, D:N.131, D:N.203, D:S.204, D:D.205

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y. et al., The complex structure of D-2-haloacid dehalogenase with L-LA. To Be Published

Release Date

2017-10-04

Peptides

(R)-2-haloacid dehalogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

(R)-2-haloacid dehalogenase

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