SMTL ID : 5h0v.1

Crystal structure of H88A mutated human transthyretin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

homo-tetramer

Ligands

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 11 residues within 4Å: Chain A: S.116 Chain B: A.18, L.109, S.114, Y.115, S.116 Chain C: A.18, L.109, S.114, Y.115, S.116 6 PLIP interactions: 3 interactions with chain B, 2 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: B:A.18, B:L.109, C:A.18, C:L.109 Hydrogen bonds: B:S.114, A:S.116 MPD.3: 13 residues within 4Å: Chain A: A.18, L.109, S.114, Y.115, S.116 Chain C: S.116 Chain D: A.18, L.109, L.110, S.111, S.114, Y.115, S.116 6 PLIP interactions: 3 interactions with chain D, 1 interactions with chain C, 2 interactions with chain A Hydrophobic interactions: D:A.18, D:L.109, A:A.18, A:L.109 Hydrogen bonds: D:S.114, C:S.116

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 1 residues within 4Å: Chain B: E.65 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yokoyama, T. et al., Stability and crystal structures of His88 mutant human transthyretins. FEBS Lett. (2017)

Release Date

2017-06-14

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Transthyretin