SMTL ID : 5h0z.1

Crystal structure of P113A mutated human transthyretin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

homo-tetramer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: S.9, M.12, H.55, G.56, R.103 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.56 Water bridges: A:S.9, A:S.9, A:S.9 Salt bridges: A:H.55, A:R.103 SO4.3: 5 residues within 4Å: Chain B: S.9, M.12, H.55, G.56, R.103 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.56 Water bridges: B:S.9, B:S.9, B:S.9 Salt bridges: B:H.55, B:R.103 SO4.5: 5 residues within 4Å: Chain C: S.9, M.12, H.55, G.56, R.103 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:S.9, C:G.56 Water bridges: C:S.9 Salt bridges: C:H.55, C:R.103 SO4.7: 5 residues within 4Å: Chain D: S.9, M.12, H.55, G.56, R.103 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:S.9, D:G.56 Water bridges: D:S.9 Salt bridges: D:H.55, D:R.103

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: K.75, K.79 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain B: K.75, K.79 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain C: K.75, K.79 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain D: K.75, K.79 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yokoyama, T. et al., Stability and crystal structures of His88 mutant human transthyretins. FEBS Lett. (2017)

Release Date

2017-06-14

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Transthyretin