SMTL ID : 5h13.1

EED in complex with PRC2 allosteric inhibitor EED396

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: C.265, G.289, R.290, K.335 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.290, A:K.335

1 x PR: PRASEODYMIUM ION(Non-covalent)

PR.2: 2 residues within 4Å: Chain A: E.327, E.329 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.327, A:E.329, H2O.1, H2O.2

1 x LQA: 4-azanylidene-2-(3-methoxy-4-propan-2-yloxy-phenyl)-6,7-dihydro-[1,3]benzodioxolo[6,5-a]quinolizine-3-carbonitrile(Non-covalent)

LQA.3: 10 residues within 4Å: Chain A: Q.29, P.30, F.32, N.81, Y.83, N.129, E.173, Y.300, R.302, R.349 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:P.30, A:F.32, A:F.32, A:Y.83, A:Y.300, A:Y.300 Hydrogen bonds: A:R.349 pi-Stacking: A:F.32, A:Y.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, L. et al., Discovery and Molecular Basis of a Diverse Set of Polycomb Repressive Complex 2 Inhibitors Recognition by EED. PLoS ONE (2017)

Release Date

2017-01-25

Peptides

Polycomb protein EED: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Polycomb protein EED