SMTL ID : 5h2u.1 (3 other biounits)

Crystal structure of PTK6 Kinase Domain complexed with Dasatinib

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.24 Å

Oligo State

monomer

Ligands

1 x 1N1: N-(2-CHLORO-6-METHYLPHENYL)-2-({6-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]-2-METHYLPYRIMIDIN-4-YL}AMINO)-1,3-THIAZOLE-5-CARBOXAMIDE(Non-covalent)

1N1.1: 18 residues within 4Å: Chain A: L.14, V.22, A.34, I.35, K.36, L.65, I.79, T.81, E.82, L.83, M.84, A.85, K.86, G.87, E.91, L.136, G.146, D.147 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.14, A:L.14, A:K.36, A:L.65, A:I.79, A:L.136 Hydrogen bonds: A:T.81, A:T.81, A:M.84, A:M.84 Water bridges: A:K.36, A:K.36, A:S.88 pi-Cation interactions: A:K.36 Halogen bonds: A:A.34

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: D.129, A.131, R.133, Y.159, H.162, P.167, W.170 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.129, A:R.133, A:Y.159 Water bridges: A:R.133 GOL.3: 6 residues within 4Å: Chain A: R.128, A.151, I.154, E.156, Y.159, Y.181 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.128, A:I.154, A:E.156, A:E.156, A:Y.181 GOL.4: 7 residues within 4Å: Chain A: E.52, N.124, Y.125, I.126, R.128, G.149, R.152 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.52, A:N.124, A:I.126, A:R.128 Water bridges: A:Y.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thakur, M.K. et al., Co-crystal structures of PTK6: With Dasatinib at 2.24 angstrom , with novel imidazo[1,2-a]pyrazin-8-amine derivative inhibitor at 1.70 angstrom resolution. Biochem. Biophys. Res. Commun. (2017)

Release Date

2017-01-04

Peptides

Protein-tyrosine kinase 6: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein-tyrosine kinase 6

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