SMTL ID : 5h3z.1 (2 other biounits)

Crystal Structure of 1,2-beta-oligoglucan phosphorylase from Lachnoclostridium phytofermentans

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: R.631, W.759, D.760, D.761, E.918, Y.923 Ligands: GOL.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.631, A:R.631, A:D.760, A:D.761, A:E.918, A:Y.923 Water bridges: A:D.632 GOL.2: 7 residues within 4Å: Chain A: G.629, R.631, D.632, Q.670, W.671, D.761 Ligands: GOL.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.631, A:Q.670, A:D.761 GOL.3: 5 residues within 4Å: Chain A: L.46, D.47, P.288, F.401, Q.410 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.46 Water bridges: A:N.72, A:N.203, A:Q.410 GOL.4: 6 residues within 4Å: Chain A: S.49, T.50, N.51, N.52, Y.54, Y.199 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.49, A:N.51, A:N.52, A:Y.54, A:Y.199, A:Y.199

1 x CA: CALCIUM ION(Non-covalent)

CA.5: 1 residues within 4Å: Chain A: D.1041 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.1041, H2O.1, H2O.15

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 4 residues within 4Å: Chain A: K.59, S.62, A.64, E.91 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.62, A:E.91 PEG.7: 7 residues within 4Å: Chain A: T.335, T.336, E.337, R.338, L.963, T.964, R.965 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.337, A:R.338 Water bridges: A:G.1000, A:G.1000, A:G.1000

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakajima, M. et al., Mechanistic insight into the substrate specificity of 1,2-beta-oligoglucan phosphorylase from Lachnoclostridium phytofermentans. Sci Rep (2017)

Release Date

2017-03-01

Peptides

Uncharacterized protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uncharacterized protein

Related Entries With Identical Sequence