SMTL ID : 5h4f.1

Structure of inorganic pyrophosphatase crystallised as a contaminant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-hexamer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: N.24, A.25 Ligands: ZN.2 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:N.24, H2O.3, H2O.4, H2O.5, H2O.6 ZN.2: 3 residues within 4Å: Chain B: N.24, A.25 Ligands: ZN.1 6 PLIP interactions: 1 interactions with chain B, 5 Ligand-Water interactions Metal complexes: B:N.24, H2O.2, H2O.2, H2O.5, H2O.5, H2O.6 ZN.3: 3 residues within 4Å: Chain C: N.24, A.25 Ligands: ZN.4 5 PLIP interactions: 1 interactions with chain C, 4 Ligand-Water interactions Metal complexes: C:N.24, H2O.8, H2O.10, H2O.10, H2O.11 ZN.4: 3 residues within 4Å: Chain D: N.24, A.25 Ligands: ZN.3 6 PLIP interactions: 1 interactions with chain D, 5 Ligand-Water interactions Metal complexes: D:N.24, H2O.7, H2O.7, H2O.10, H2O.11, H2O.11 ZN.5: 3 residues within 4Å: Chain E: N.24, A.25 Ligands: ZN.6 5 PLIP interactions: 1 interactions with chain E, 4 Ligand-Water interactions Metal complexes: E:N.24, H2O.13, H2O.15, H2O.15, H2O.16 ZN.6: 3 residues within 4Å: Chain F: N.24, A.25 Ligands: ZN.5 6 PLIP interactions: 1 interactions with chain F, 5 Ligand-Water interactions Metal complexes: F:N.24, H2O.13, H2O.13, H2O.15, H2O.16, H2O.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hatti, K. et al., Structure determination of contaminant proteins using the MarathonMR procedure. J. Struct. Biol. (2017)

Release Date

2016-11-16

Peptides

inorganic pyrophosphatase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

inorganic pyrophosphatase

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