SMTL ID : 5h4y.1

Crystal structure of human synaptotagmin 5 C2A domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.47, D.53, D.105, F.106, D.107 Ligands: CA.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.47, A:D.53, A:D.105, A:F.106, H2O.2 CA.2: 6 residues within 4Å: Chain A: L.46, D.47, D.105, D.107, D.113 Ligands: CA.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:L.46, A:D.47, A:D.105, A:D.113, H2O.4 CA.3: 4 residues within 4Å: Chain A: D.107, S.110, R.111, D.113 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.107, A:S.110, A:R.111, A:D.113, H2O.4, H2O.5

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 4 residues within 4Å: Chain A: D.107, R.108, F.109, S.110 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.108, A:F.109, A:S.110 Water bridges: A:D.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qiu, X. et al., Structural analysis of Ca(2+)-binding pocket of synaptotagmin 5 C2A domain. Int. J. Biol. Macromol. (2017)

Release Date

2016-11-30

Peptides

Synaptotagmin-5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Synaptotagmin-5