SMTL ID : 5h7q.1

Crystal structure of human MNDA PYD domain with MBP tag

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 16 residues within 4Å: Chain A: N.13, D.15, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, M.331, W.341, R.345 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:W.63, A:R.67, A:R.67, A:Y.156, A:R.345 Water bridges: A:R.345

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 1 residues within 4Å: Chain A: A.319 2 PLIP interactions: 2 interactions with chain A Water bridges: A:A.313, A:A.313 ACT.3: 7 residues within 4Å: Chain A: H.65, A.97, Y.177, I.330, M.331, P.332, N.333 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:N.333 Hydrogen bonds: A:N.333, A:N.333 Water bridges: A:N.333

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jin, T.C. et al., Design of an expression system to enhance MBP-mediated crystallization. Sci Rep (2017)

Release Date

2017-02-15

Peptides

MNDA PYD domain with MBP tag: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MNDA PYD domain with MBP tag