SMTL ID : 5h7r.1

Structural basis of the flanking zinc-finger motifs crucial for the E3 ligase activity of the LNX1 RING domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.4, C.7, H.11, H.17 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.4, A:C.7, A:H.11, A:H.17 ZN.2: 4 residues within 4Å: Chain A: C.31, C.34, C.51, C.54 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.31, A:C.34, A:C.51, A:C.54 ZN.3: 4 residues within 4Å: Chain A: C.95, C.101, H.113, C.118 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.95, A:C.101, A:H.113, A:C.118 ZN.4: 4 residues within 4Å: Chain A: C.46, H.48, C.65, D.68 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.46, A:C.65, A:D.68, A:D.68 ZN.5: 4 residues within 4Å: Chain B: C.4, C.7, H.11, H.17 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.4, B:C.7, B:H.11, B:H.17 ZN.6: 4 residues within 4Å: Chain B: C.31, C.34, C.51, C.54 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.31, B:C.34, B:C.51, B:C.54 ZN.7: 4 residues within 4Å: Chain B: C.95, C.101, H.113, C.118 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.95, B:C.101, B:H.113, B:C.118 ZN.8: 4 residues within 4Å: Chain B: C.46, H.48, C.65, D.68 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.46, B:C.65, B:D.68, B:D.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nayak, D. et al., Structure of LNX1:Ubc13~Ubiquitin Complex Reveals the Role of Additional Motifs for the E3 Ligase Activity of LNX1. J. Mol. Biol. (2018)

Release Date

2017-11-29

Peptides

E3 ubiquitin-protein ligase LNX: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
D

E3 ubiquitin-protein ligase LNX

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