SMTL ID : 5h8g.1

Crystal structure of CK2 with compound 7b

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 6 residues within 4Å: Chain A: G.48, K.49, Y.50, S.51 Ligands: EDO.16, 5Y4.21 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: V.11, H.148, T.314, A.315 Ligand excluded by PLIP

18 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: D.156, K.158, L.178, A.193, S.194 Ligands: 5Y4.21 Ligand excluded by PLIP EDO.4: 6 residues within 4Å: Chain A: R.155, E.180, Q.186, Y.188, N.189 Ligands: EDO.12 Ligand excluded by PLIP EDO.5: 3 residues within 4Å: Chain A: R.306, Y.307, D.308 Ligand excluded by PLIP EDO.6: 5 residues within 4Å: Chain A: K.158, H.160, S.194, Y.196, F.197 Ligand excluded by PLIP EDO.7: 4 residues within 4Å: Chain A: Y.131, D.132, F.135, R.169 Ligand excluded by PLIP EDO.8: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP EDO.9: 2 residues within 4Å: Chain A: E.252, D.256 Ligand excluded by PLIP EDO.10: 5 residues within 4Å: Chain A: K.229, F.232, R.244, V.248, F.284 Ligand excluded by PLIP EDO.11: 2 residues within 4Å: Chain A: T.96, E.114 Ligand excluded by PLIP EDO.12: 6 residues within 4Å: Chain A: K.77, R.80, R.155, L.178, N.189 Ligands: EDO.4 Ligand excluded by PLIP EDO.13: 4 residues within 4Å: Chain A: N.16, T.17, W.24, H.183 Ligand excluded by PLIP EDO.14: 3 residues within 4Å: Chain A: D.25, Y.26, E.27 Ligand excluded by PLIP EDO.15: 7 residues within 4Å: Chain A: N.118, D.120, F.121, P.159, H.160, V.162, M.163 Ligand excluded by PLIP EDO.16: 7 residues within 4Å: Chain A: Y.50, K.77, D.175, G.177, L.178 Ligands: CL.1, 5Y4.21 Ligand excluded by PLIP EDO.17: 5 residues within 4Å: Chain A: Q.36, L.41, I.69, V.101, A.110 Ligand excluded by PLIP EDO.18: 4 residues within 4Å: Chain A: K.303, E.317, E.320, H.321 Ligand excluded by PLIP EDO.19: 6 residues within 4Å: Chain A: G.34, N.35, Q.36, V.101, K.102, P.104 Ligand excluded by PLIP EDO.20: 4 residues within 4Å: Chain A: R.10, V.11, Y.12, T.13 Ligand excluded by PLIP

1 x 5Y4: ~{N}-[5-[[3-cyano-7-(cyclopropylamino)pyrazolo[1,5-a]pyrimidin-5-yl]amino]-2-[2-(dimethylamino)ethyl-methyl-amino]phenyl]ethanamide(Non-covalent)

5Y4.21: 20 residues within 4Å: Chain A: L.45, R.47, G.48, S.51, V.53, V.66, K.68, I.95, F.113, E.114, H.115, V.116, N.118, N.161, M.163, I.174, D.175 Ligands: CL.1, EDO.3, EDO.16 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.45, A:L.45, A:V.53, A:V.53, A:V.66, A:K.68, A:I.174 Hydrogen bonds: A:K.68, A:V.116, A:V.116, A:D.175, A:D.175, A:D.175 Water bridges: A:L.45, A:E.81 Salt bridges: A:D.175

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dowling, J.E. et al., Potent and Selective CK2 Kinase Inhibitors with Effects on Wnt Pathway Signaling in Vivo. Acs Med.Chem.Lett. (2016)

Release Date

2016-02-10

Peptides

Casein kinase II subunit alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Casein kinase II subunit alpha

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