- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.29 Å
- Oligo State
- homo-octamer
- Ligands
- 15 x GOL: GLYCEROL(Non-functional Binders)
- 9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 5 residues within 4Å:- Chain A: R.286, P.288, D.289
- Chain B: V.303
- Chain C: P.141
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.289
EDO.3: 3 residues within 4Å:- Chain A: A.186, I.187, G.188
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.188, A:G.188
EDO.12: 6 residues within 4Å:- Chain C: R.286, R.287, P.288, D.289
- Chain D: V.303
- Chain E: P.141
3 PLIP interactions:2 interactions with chain F, 1 interactions with chain C- Water bridges: F:R.287, F:R.287, C:R.287
EDO.16: 4 residues within 4Å:- Chain C: V.303
- Chain D: R.286, P.288, D.289
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain D- Water bridges: A:R.287, A:R.287
- Hydrogen bonds: D:D.289, D:D.289
EDO.17: 2 residues within 4Å:- Chain D: H.192, D.193
1 PLIP interactions:1 interactions with chain D- Water bridges: D:H.192
EDO.21: 5 residues within 4Å:- Chain E: R.286, R.287, P.288, D.289
- Chain F: V.303
4 PLIP interactions:2 interactions with chain E, 2 interactions with chain H- Water bridges: E:R.287, E:R.287, H:R.287, H:R.287
EDO.27: 7 residues within 4Å:- Chain C: D.289
- Chain D: P.141
- Chain E: V.303
- Chain F: R.286, R.287, P.288, D.289
5 PLIP interactions:3 interactions with chain C, 1 interactions with chain F, 1 interactions with chain D- Hydrogen bonds: C:D.289
- Water bridges: C:R.287, C:R.287, F:R.287, D:N.140
EDO.31: 6 residues within 4Å:- Chain H: N.103, A.104, H.105, K.136, Y.138, N.140
2 PLIP interactions:2 interactions with chain H- Hydrogen bonds: H:H.105, H:H.105
EDO.32: 5 residues within 4Å:- Chain F: P.141
- Chain G: V.303
- Chain H: R.286, P.288, D.289
4 PLIP interactions:3 interactions with chain E, 1 interactions with chain H- Water bridges: E:R.287, E:R.287, E:D.289
- Hydrogen bonds: H:D.289
- 6 x PUT: 1,4-DIAMINOBUTANE(Non-covalent)
PUT.4: 8 residues within 4Å:- Chain A: W.280
- Chain B: P.128, Y.133, S.161, W.162, A.186, I.187, E.190
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:Y.133, B:Y.133, B:W.162, B:W.162, B:I.187
- Hydrogen bonds: B:S.161, B:S.161, B:E.190
- Water bridges: B:W.162
PUT.8: 8 residues within 4Å:- Chain C: P.128, Y.133, S.161, W.162, A.186, I.187, E.190
- Chain D: W.280
7 PLIP interactions:7 interactions with chain C- Hydrophobic interactions: C:Y.133, C:Y.133, C:W.162, C:I.187
- Hydrogen bonds: C:S.161, C:E.190
- Water bridges: C:W.162
PUT.14: 6 residues within 4Å:- Chain C: W.280
- Chain D: Y.133, S.161, W.162, A.186, E.190
6 PLIP interactions:6 interactions with chain D- Hydrophobic interactions: D:Y.133, D:Y.133, D:W.162
- Hydrogen bonds: D:S.161, D:E.190
- Water bridges: D:W.162
PUT.19: 8 residues within 4Å:- Chain E: P.128, Y.133, S.161, W.162, A.186, I.187, E.190
- Chain F: W.280
7 PLIP interactions:7 interactions with chain E- Hydrophobic interactions: E:Y.133, E:Y.133, E:W.162, E:I.187
- Hydrogen bonds: E:S.161, E:E.190
- Water bridges: E:S.161
PUT.23: 7 residues within 4Å:- Chain E: W.280
- Chain F: Y.133, S.161, W.162, A.186, I.187, E.190
7 PLIP interactions:7 interactions with chain F- Hydrophobic interactions: F:Y.133, F:Y.133, F:W.162, F:I.187
- Hydrogen bonds: F:S.161, F:S.161, F:E.190
PUT.28: 7 residues within 4Å:- Chain G: Y.133, S.161, W.162, A.186, I.187, E.190
- Chain H: W.280
7 PLIP interactions:7 interactions with chain G- Hydrophobic interactions: G:Y.133, G:Y.133, G:W.162, G:I.187
- Hydrogen bonds: G:S.161, G:E.190
- Water bridges: G:W.162
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sekula, B. et al., Structural Investigations of N-carbamoylputrescine Amidohydrolase from Medicago truncatula: Insights into the Ultimate Step of Putrescine Biosynthesis in Plants. Front Plant Sci (2016)
- Release Date
- 2016-04-20
- Peptides
- N-carbamoylputrescine amidohydrolase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
IB
JC
KD
LE
MF
NG
OH
P
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.29 Å
- Oligo State
- homo-octamer
- Ligands
- 15 x GOL: GLYCEROL(Non-functional Binders)
- 9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 6 x PUT: 1,4-DIAMINOBUTANE(Non-covalent)
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sekula, B. et al., Structural Investigations of N-carbamoylputrescine Amidohydrolase from Medicago truncatula: Insights into the Ultimate Step of Putrescine Biosynthesis in Plants. Front Plant Sci (2016)
- Release Date
- 2016-04-20
- Peptides
- N-carbamoylputrescine amidohydrolase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
IB
JC
KD
LE
MF
NG
OH
P