SMTL ID : 5h8s.1 (1 other biounit)

Structure of the human GluA2 LBD in complex with GNE3419

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x GLU: GLUTAMIC ACID(Non-covalent)

GLU.1: 11 residues within 4Å: Chain A: Y.61, P.89, L.90, T.91, R.96, L.138, G.141, S.142, T.143, E.193, Y.220 13 PLIP interactions: 1 Ligand-Ligand interactions, 12 interactions with chain A Hydrogen bonds: E.1, A:P.89, A:T.91, A:T.91, A:S.142, A:T.143, A:T.143 Hydrophobic interactions: A:Y.61, A:L.138 Water bridges: A:L.138, A:E.193, A:E.193 Salt bridges: A:R.96 GLU.6: 11 residues within 4Å: Chain B: Y.61, P.89, L.90, T.91, R.96, L.138, G.141, S.142, T.143, E.193, Y.220 15 PLIP interactions: 11 interactions with chain B, 4 Ligand-Ligand interactions Hydrophobic interactions: B:Y.61, B:L.138 Hydrogen bonds: B:T.91, B:T.91, B:S.142, B:T.143, B:T.143, B:E.193, E.6, E.6, E.6, E.6 Water bridges: B:L.138, B:E.193 Salt bridges: B:R.96

1 x 5YC: 7-[[ethyl(phenyl)amino]methyl]-2-methyl-[1,3,4]thiadiazolo[3,2-a]pyrimidin-5-one(Non-covalent)

5YC.2: 14 residues within 4Å: Chain A: P.105, M.107, S.108, S.217, K.218, G.219 Chain B: I.92, P.105, M.107, S.108, S.217, K.218, G.219, S.242 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:I.92, B:P.105, A:P.105 Water bridges: B:S.242

4 x ZN: ZINC ION(Non-covalent)

ZN.3: 3 residues within 4Å: Chain A: E.42, H.46 Ligands: CAC.5 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.42, A:H.46 ZN.4: 1 residues within 4Å: Chain A: H.23 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.23, H2O.7 ZN.7: 5 residues within 4Å: Chain B: E.42, K.45, H.46, L.241, Q.244 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.42, B:H.46, H2O.12 ZN.8: 2 residues within 4Å: Chain B: D.156, T.160 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.156

1 x CAC: CACODYLATE ION(Non-covalent)

CAC.5: 3 residues within 4Å: Chain A: E.42, H.46 Ligands: ZN.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hackos, D.H. et al., Positive Allosteric Modulators of GluN2A-Containing NMDARs with Distinct Modes of Action and Impacts on Circuit Function. Neuron (2016)

Release Date

2016-02-24

Peptides

Glutamate receptor 2,Glutamate receptor 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutamate receptor 2,Glutamate receptor 2

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