SMTL ID : 5h8z.1 (1 other biounit)

Crystal structure of the C49A C353A mutant Fenna-Matthews-Olson Protein from Chlorobaculum Tepidum

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-trimer

Ligands

24 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)

BCL.1: 25 residues within 4Å: Chain A: V.103, V.105, F.108, H.110, F.112, M.149, V.151, L.153, D.157, L.158, T.161, W.162, T.165, F.182, W.183, V.204, G.218, S.220, W.222 Chain C: S.126, A.128, V.129 Ligands: BCL.2, BCL.6, BCL.24 15 PLIP interactions: 14 interactions with chain A, 1 interactions with chain C, Hydrophobic interactions: A:V.103, A:F.108, A:F.112, A:V.151, A:L.153, A:L.158, A:T.161, A:W.162, A:F.182, A:W.183, A:V.204, A:W.222, A:W.222, C:V.129 Metal complexes: A:H.110 BCL.2: 27 residues within 4Å: Chain A: S.41, P.42, L.43, S.72, V.74, N.79, K.80, L.81, V.103, V.105, F.112, F.114, F.182, W.183, I.185 Chain C: Y.124, V.129, V.133, P.136, I.137, Y.138, M.139, Q.140 Ligands: BCL.1, BCL.3, BCL.6, BCL.7 19 PLIP interactions: 13 interactions with chain A, 5 interactions with chain C, 1 Ligand-Water interactions Hydrophobic interactions: A:P.42, A:L.43, A:V.74, A:N.79, A:L.81, A:L.81, A:V.103, A:V.105, A:F.112, A:F.114, A:F.114, A:I.185, A:I.185, C:Y.138, C:Y.138 Hydrogen bonds: C:I.137, C:Y.138, C:Q.140 Metal complexes: H2O.8 BCL.3: 23 residues within 4Å: Chain A: A.11, S.13, Y.15, A.33, A.37, P.38, P.39, A.40, A.188, F.257, S.259, I.264, V.266, H.297, V.300, G.301, N.304, F.306 Ligands: BCL.2, BCL.4, BCL.5, BCL.6, BCL.7 15 PLIP interactions: 15 interactions with chain A, Hydrophobic interactions: A:A.11, A:A.33, A:A.37, A:A.188, A:F.257, A:I.264, A:V.266, A:V.266, A:V.300, A:V.300, A:F.306, A:F.306 Hydrogen bonds: A:Y.15, A:A.40 Metal complexes: A:H.297 BCL.4: 25 residues within 4Å: Chain A: Y.15, I.17, V.29, A.31, V.50, A.255, G.256, F.257, V.268, I.286, L.287, H.289, P.290, P.293, L.294, H.297, L.312, Y.344, W.347, V.348, F.359, I.361 Ligands: BCL.3, BCL.5, BCL.7 19 PLIP interactions: 19 interactions with chain A, Hydrophobic interactions: A:Y.15, A:Y.15, A:I.17, A:V.29, A:A.31, A:V.50, A:A.255, A:F.257, A:F.257, A:V.268, A:L.287, A:P.290, A:P.293, A:P.293, A:L.294, A:H.297, A:W.347, A:V.348 Metal complexes: A:H.289 BCL.5: 25 residues within 4Å: Chain A: V.50, V.54, V.64, I.66, F.70, I.87, D.233, S.234, R.237, E.240, L.241, F.242, P.243, V.253, A.255, V.268, F.272, P.273, G.274, L.287, P.290 Ligands: BCL.3, BCL.4, BCL.6, BCL.7 14 PLIP interactions: 14 interactions with chain A, Hydrophobic interactions: A:V.50, A:V.54, A:I.66, A:I.87, A:L.241, A:P.243, A:V.253, A:A.255, A:V.268, A:F.272, A:P.273, A:L.287 Salt bridges: A:R.237 Metal complexes: A:L.241 BCL.6: 32 residues within 4Å: Chain A: L.52, V.54, I.66, A.68, F.70, I.83, A.85, I.87, R.95, I.96, S.97, F.114, G.116, V.118, Q.143, H.145, I.147, W.183, W.222, F.224, H.226, S.234, W.238, L.241, A.251, Q.252, V.253 Ligands: BCL.1, BCL.2, BCL.3, BCL.5, BCL.7 13 PLIP interactions: 13 interactions with chain A, Hydrophobic interactions: A:A.68, A:F.70, A:I.83, A:I.147, A:W.183, A:W.222, A:F.224, A:W.238, A:L.241, A:A.251, A:V.253 Hydrogen bonds: A:R.95 Metal complexes: A:H.145 BCL.7: 21 residues within 4Å: Chain A: A.40, F.70, F.184, I.185, P.187, A.188, A.191, L.192, Q.197, I.292, P.293, H.296, H.297, M.299, V.300 Chain C: Y.138 Ligands: BCL.2, BCL.3, BCL.4, BCL.5, BCL.6 10 PLIP interactions: 10 interactions with chain A, Hydrophobic interactions: A:F.70, A:F.184, A:F.184, A:P.187, A:P.187, A:A.191, A:P.293 Hydrogen bonds: A:Q.197 pi-Stacking: A:H.296 Metal complexes: A:H.296 BCL.8: 18 residues within 4Å: Chain A: L.121, F.122, Y.123, Y.124, R.125 Chain B: D.160, T.161, G.164, T.165, K.167, A.168, S.171, T.172, F.175, W.178, I.179, F.182 Ligands: BCL.9 13 PLIP interactions: 3 interactions with chain A, 10 interactions with chain B, Hydrophobic interactions: A:Y.123, B:D.160, B:T.161, B:T.165, B:A.168, B:F.175, B:I.179, B:F.182, B:F.182 Hydrogen bonds: A:R.125, B:S.171, B:T.172 Metal complexes: A:Y.123 BCL.9: 25 residues within 4Å: Chain A: S.126, A.128, V.129 Chain B: V.103, V.105, F.108, H.110, F.112, M.149, V.151, L.153, D.157, L.158, T.161, W.162, T.165, F.182, W.183, V.204, G.218, S.220, W.222 Ligands: BCL.8, BCL.10, BCL.14 15 PLIP interactions: 14 interactions with chain B, 1 interactions with chain A, Hydrophobic interactions: B:V.103, B:F.108, B:F.112, B:V.151, B:L.153, B:L.158, B:T.161, B:W.162, B:F.182, B:W.183, B:V.204, B:W.222, B:W.222, A:V.129 Metal complexes: B:H.110 BCL.10: 27 residues within 4Å: Chain A: Y.124, V.129, V.133, P.136, I.137, Y.138, M.139, Q.140 Chain B: S.41, P.42, L.43, S.72, V.74, N.79, K.80, L.81, V.103, V.105, F.112, F.114, F.182, W.183, I.185 Ligands: BCL.9, BCL.11, BCL.14, BCL.15 20 PLIP interactions: 13 interactions with chain B, 6 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: B:P.42, B:L.43, B:V.74, B:N.79, B:L.81, B:L.81, B:V.103, B:V.105, B:F.112, B:F.114, B:F.114, B:I.185, B:I.185, A:Y.138, A:Y.138 Hydrogen bonds: A:I.137, A:Y.138, A:Q.140 Water bridges: A:Y.124 Metal complexes: H2O.19 BCL.11: 23 residues within 4Å: Chain B: A.11, S.13, Y.15, A.33, A.37, P.38, P.39, A.40, A.188, F.257, S.259, I.264, V.266, H.297, V.300, G.301, N.304, F.306 Ligands: BCL.10, BCL.12, BCL.13, BCL.14, BCL.15 14 PLIP interactions: 14 interactions with chain B, Hydrophobic interactions: B:A.11, B:A.33, B:A.37, B:A.188, B:F.257, B:I.264, B:V.266, B:V.266, B:V.300, B:V.300, B:F.306, B:F.306 Hydrogen bonds: B:A.40 Metal complexes: B:H.297 BCL.12: 25 residues within 4Å: Chain B: Y.15, I.17, V.29, A.31, V.50, A.255, G.256, F.257, V.268, I.286, L.287, H.289, P.290, P.293, L.294, H.297, L.312, Y.344, W.347, V.348, F.359, I.361 Ligands: BCL.11, BCL.13, BCL.15 19 PLIP interactions: 19 interactions with chain B, Hydrophobic interactions: B:Y.15, B:Y.15, B:I.17, B:V.29, B:A.31, B:V.50, B:A.255, B:F.257, B:F.257, B:V.268, B:L.287, B:P.290, B:P.293, B:P.293, B:L.294, B:H.297, B:W.347, B:V.348 Metal complexes: B:H.289 BCL.13: 25 residues within 4Å: Chain B: V.50, V.54, V.64, I.66, F.70, I.87, D.233, S.234, R.237, E.240, L.241, F.242, P.243, V.253, A.255, V.268, F.272, P.273, G.274, L.287, P.290 Ligands: BCL.11, BCL.12, BCL.14, BCL.15 15 PLIP interactions: 15 interactions with chain B, Hydrophobic interactions: B:V.50, B:V.54, B:I.66, B:I.87, B:L.241, B:P.243, B:V.253, B:A.255, B:V.268, B:F.272, B:P.273, B:L.287 Water bridges: B:D.233 Salt bridges: B:R.237 Metal complexes: B:L.241 BCL.14: 32 residues within 4Å: Chain B: L.52, V.54, I.66, A.68, F.70, I.83, A.85, I.87, R.95, I.96, S.97, F.114, G.116, V.118, Q.143, H.145, I.147, W.183, W.222, F.224, H.226, S.234, W.238, L.241, A.251, Q.252, V.253 Ligands: BCL.9, BCL.10, BCL.11, BCL.13, BCL.15 13 PLIP interactions: 13 interactions with chain B, Hydrophobic interactions: B:A.68, B:F.70, B:I.83, B:I.147, B:W.183, B:W.222, B:F.224, B:W.238, B:L.241, B:A.251, B:V.253 Hydrogen bonds: B:R.95 Metal complexes: B:H.145 BCL.15: 21 residues within 4Å: Chain A: Y.138 Chain B: A.40, F.70, F.184, I.185, P.187, A.188, A.191, L.192, Q.197, I.292, P.293, H.296, H.297, M.299, V.300 Ligands: BCL.10, BCL.11, BCL.12, BCL.13, BCL.14 10 PLIP interactions: 10 interactions with chain B, Hydrophobic interactions: B:F.70, B:F.184, B:F.184, B:P.187, B:P.187, B:A.191, B:P.293 Hydrogen bonds: B:Q.197 pi-Stacking: B:H.296 Metal complexes: B:H.296 BCL.16: 18 residues within 4Å: Chain B: L.121, F.122, Y.123, Y.124, R.125 Chain C: D.160, T.161, G.164, T.165, K.167, A.168, S.171, T.172, F.175, W.178, I.179, F.182 Ligands: BCL.17 13 PLIP interactions: 10 interactions with chain C, 3 interactions with chain B, Hydrophobic interactions: C:D.160, C:T.161, C:T.165, C:A.168, C:F.175, C:I.179, C:F.182, C:F.182, B:Y.123 Hydrogen bonds: C:S.171, C:T.172, B:R.125 Metal complexes: B:Y.123 BCL.17: 25 residues within 4Å: Chain B: S.126, A.128, V.129 Chain C: V.103, V.105, F.108, H.110, F.112, M.149, V.151, L.153, D.157, L.158, T.161, W.162, T.165, F.182, W.183, V.204, G.218, S.220, W.222 Ligands: BCL.16, BCL.18, BCL.22 15 PLIP interactions: 14 interactions with chain C, 1 interactions with chain B, Hydrophobic interactions: C:V.103, C:F.108, C:F.112, C:V.151, C:L.153, C:L.158, C:T.161, C:W.162, C:F.182, C:W.183, C:V.204, C:W.222, C:W.222, B:V.129 Metal complexes: C:H.110 BCL.18: 27 residues within 4Å: Chain B: Y.124, V.129, V.133, P.136, I.137, Y.138, M.139, Q.140 Chain C: S.41, P.42, L.43, S.72, V.74, N.79, K.80, L.81, V.103, V.105, F.112, F.114, F.182, W.183, I.185 Ligands: BCL.17, BCL.19, BCL.22, BCL.23 20 PLIP interactions: 6 interactions with chain B, 13 interactions with chain C, 1 Ligand-Water interactions Hydrophobic interactions: B:Y.138, B:Y.138, C:P.42, C:L.43, C:V.74, C:N.79, C:L.81, C:L.81, C:V.103, C:V.105, C:F.112, C:F.114, C:F.114, C:I.185, C:I.185 Hydrogen bonds: B:I.137, B:Y.138, B:Q.140 Water bridges: B:Y.124 Metal complexes: H2O.30 BCL.19: 23 residues within 4Å: Chain C: A.11, S.13, Y.15, A.33, A.37, P.38, P.39, A.40, A.188, F.257, S.259, I.264, V.266, H.297, V.300, G.301, N.304, F.306 Ligands: BCL.18, BCL.20, BCL.21, BCL.22, BCL.23 14 PLIP interactions: 14 interactions with chain C, Hydrophobic interactions: C:A.11, C:A.33, C:A.37, C:A.188, C:F.257, C:I.264, C:V.266, C:V.266, C:V.300, C:V.300, C:F.306, C:F.306 Hydrogen bonds: C:A.40 Metal complexes: C:H.297 BCL.20: 25 residues within 4Å: Chain C: Y.15, I.17, V.29, A.31, V.50, A.255, G.256, F.257, V.268, I.286, L.287, H.289, P.290, P.293, L.294, H.297, L.312, Y.344, W.347, V.348, F.359, I.361 Ligands: BCL.19, BCL.21, BCL.23 19 PLIP interactions: 19 interactions with chain C, Hydrophobic interactions: C:Y.15, C:Y.15, C:I.17, C:V.29, C:A.31, C:V.50, C:A.255, C:F.257, C:F.257, C:V.268, C:L.287, C:P.290, C:P.293, C:P.293, C:L.294, C:H.297, C:W.347, C:V.348 Metal complexes: C:H.289 BCL.21: 25 residues within 4Å: Chain C: V.50, V.54, V.64, I.66, F.70, I.87, D.233, S.234, R.237, E.240, L.241, F.242, P.243, V.253, A.255, V.268, F.272, P.273, G.274, L.287, P.290 Ligands: BCL.19, BCL.20, BCL.22, BCL.23 15 PLIP interactions: 15 interactions with chain C, Hydrophobic interactions: C:V.50, C:V.54, C:I.66, C:I.87, C:L.241, C:P.243, C:V.253, C:A.255, C:V.268, C:F.272, C:P.273, C:L.287 Water bridges: C:D.233 Salt bridges: C:R.237 Metal complexes: C:L.241 BCL.22: 32 residues within 4Å: Chain C: L.52, V.54, I.66, A.68, F.70, I.83, A.85, I.87, R.95, I.96, S.97, F.114, G.116, V.118, Q.143, H.145, I.147, W.183, W.222, F.224, H.226, S.234, W.238, L.241, A.251, Q.252, V.253 Ligands: BCL.17, BCL.18, BCL.19, BCL.21, BCL.23 13 PLIP interactions: 13 interactions with chain C, Hydrophobic interactions: C:A.68, C:F.70, C:I.83, C:I.147, C:W.183, C:W.222, C:F.224, C:W.238, C:L.241, C:A.251, C:V.253 Hydrogen bonds: C:R.95 Metal complexes: C:H.145 BCL.23: 21 residues within 4Å: Chain B: Y.138 Chain C: A.40, F.70, F.184, I.185, P.187, A.188, A.191, L.192, Q.197, I.292, P.293, H.296, H.297, M.299, V.300 Ligands: BCL.18, BCL.19, BCL.20, BCL.21, BCL.22 10 PLIP interactions: 10 interactions with chain C, Hydrophobic interactions: C:F.70, C:F.184, C:F.184, C:P.187, C:P.187, C:A.191, C:P.293 Hydrogen bonds: C:Q.197 pi-Stacking: C:H.296 Metal complexes: C:H.296 BCL.24: 18 residues within 4Å: Chain A: D.160, T.161, G.164, T.165, K.167, A.168, S.171, T.172, F.175, W.178, I.179, F.182 Chain C: L.121, F.122, Y.123, Y.124, R.125 Ligands: BCL.1 14 PLIP interactions: 11 interactions with chain A, 3 interactions with chain C, Hydrophobic interactions: A:D.160, A:T.161, A:T.165, A:A.168, A:F.175, A:I.179, A:F.182, A:F.182, C:Y.123 Hydrogen bonds: A:S.171, A:T.172, C:R.125 Water bridges: A:T.161 Metal complexes: C:Y.123

Links

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Citation

Saer, R. et al., Perturbation of bacteriochlorophyll molecules in Fenna-Matthews-Olson protein complexes through mutagenesis of cysteine residues. Biochim.Biophys.Acta (2016)

Release Date

2016-05-18

Peptides

Bacteriochlorophyll a protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Bacteriochlorophyll a protein

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