SMTL ID : 5hbj.1

CDK8-CYCC IN COMPLEX WITH 8-[2-Amino-3-chloro-5-(1-methyl-1H-indazol-5-yl)-pyridin-4-yl]-2,8-diaza-spiro[4.5]decan-1-one

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 5Y8: 8-[2-azanyl-3-chloranyl-5-(1-methylindazol-5-yl)pyridin-4-yl]-2,8-diazaspiro[4.5]decan-1-one(Non-covalent)

5Y8.1: 16 residues within 4Å: Chain A: V.29, Y.34, V.37, A.52, K.54, I.81, F.99, D.100, Y.101, A.102, D.105, H.108, L.160, A.174, D.175, R.358 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.29, A:Y.34, A:V.37, A:L.160, A:A.174 Hydrogen bonds: A:D.100, A:A.102, A:D.175, A:R.358 Water bridges: A:E.68 pi-Cation interactions: A:R.358

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: P.126, G.128 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.128

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 2 residues within 4Å: Chain B: Q.47, F.75 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mallinger, A. et al., Discovery of Potent, Selective, and Orally Bioavailable Small-Molecule Modulators of the Mediator Complex-Associated Kinases CDK8 and CDK19. J.Med.Chem. (2016)

Release Date

2016-02-03

Peptides

Cyclin-dependent kinase 8: A
Cyclin-C: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cyclin-dependent kinase 8

Cyclin-C

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