SMTL ID : 5hbn.1

ClpC N-terminal domain with bound phospho-arginine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: T.77, H.79 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.77 Water bridges: A:I.78 Salt bridges: A:H.79 SO4.2: 2 residues within 4Å: Chain A: R.96, K.97 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.96, A:K.97 SO4.3: 3 residues within 4Å: Chain A: E.58, K.59, K.62 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.59 Salt bridges: A:K.59, A:K.62 SO4.4: 6 residues within 4Å: Chain A: G.99, H.100, S.101, Y.102, G.148, S.149 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.101, A:Y.102, A:S.149, A:S.149, A:S.149 Water bridges: A:H.100, A:H.100 Salt bridges: A:H.100 SO4.5: 4 residues within 4Å: Chain A: R.40, S.57, E.58, Q.61 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.57, A:S.57, A:Q.61 Salt bridges: A:R.40

2 x RPI: phospho-arginine(Non-covalent)

RPI.6: 11 residues within 4Å: Chain A: N.28, G.30, T.31, E.32, T.81, P.82, R.83, A.84, G.118, V.119, A.120 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:T.81 Hydrogen bonds: A:T.31, A:T.31, A:E.32, A:T.81, A:T.81, A:R.83, A:R.83, A:A.84, A:V.119 Water bridges: A:E.32, A:R.83, A:R.83 Salt bridges: A:E.32 RPI.7: 15 residues within 4Å: Chain A: T.7, R.9, A.10, G.44, I.45, A.46, K.48, H.100, G.104, T.105, E.106, H.107, T.147, G.148, S.149 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:T.7, A:T.7, A:R.9, A:A.10, A:I.45, A:K.48, A:T.105, A:T.105, A:T.105 Water bridges: A:R.9, A:H.100 Salt bridges: A:R.9, A:K.48, A:E.106

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.8: 5 residues within 4Å: Chain A: F.6, T.7, E.8, Q.11, Y.102 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.8, A:Q.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Trentini, D.B. et al., Arginine phosphorylation marks proteins for degradation by a Clp protease. Nature (2016)

Release Date

2016-10-12

Peptides

Negative regulator of genetic competence ClpC/MecB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Negative regulator of genetic competence ClpC/MecB