SMTL ID : 5hc6.1

Crystal structure of lavandulyl diphosphate synthase from Lavandula x intermedia in apo form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: D.21, G.22, H.23, R.24, H.38, R.72 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:D.21, A:D.21, A:G.22, A:H.23, A:R.24 Salt bridges: A:H.23, A:R.24, A:H.38, A:R.72 SO4.2: 5 residues within 4Å: Chain A: Q.103, H.135, T.183, K.184, F.185 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.184 Salt bridges: A:H.135, A:K.184 SO4.3: 3 residues within 4Å: Chain A: R.193, R.199, S.201 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.201 Water bridges: A:N.69 Salt bridges: A:R.193, A:R.199 SO4.4: 6 residues within 4Å: Chain B: D.21, G.22, H.23, R.24, H.38, R.72 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:D.21, B:G.22, B:H.23, B:R.24 Salt bridges: B:H.23, B:R.24, B:H.38, B:R.72 SO4.5: 5 residues within 4Å: Chain B: Q.103, H.135, T.183, K.184, F.185 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.184 Salt bridges: B:H.135, B:K.184 SO4.6: 3 residues within 4Å: Chain B: R.193, R.199, S.201 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.201 Water bridges: B:N.69 Salt bridges: B:R.193, B:R.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, M.X. et al., Structure and Function of a "Head-to-Middle" Prenyltransferase: Lavandulyl Diphosphate Synthase. Angew.Chem.Int.Ed.Engl. (2016)

Release Date

2016-03-02

Peptides

prenyltransference for protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

prenyltransference for protein

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