SMTL ID : 5hcc.1

Ternary complex of human Complement C5 with Ornithodoros moubata OmCI and Dermacentor andersoni RaCI3.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain B: S.182, N.231, N.233, V.246 No protein-ligand interaction detected (PLIP)

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: L.108, F.109, G.195, T.196, F.608 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.108, A:T.196, A:T.196 EDO.3: 4 residues within 4Å: Chain A: T.112, K.114, P.115, L.602 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.592, A:Y.592 EDO.4: 6 residues within 4Å: Chain B: M.379, R.382, Q.417, N.418, S.421 Ligands: EDO.6 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:R.382, B:R.382, B:N.418, B:S.421 Water bridges: B:R.382, B:N.418 EDO.5: 6 residues within 4Å: Chain B: L.451, Q.452, E.461, S.506, D.552, R.568 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.452, B:D.552, B:R.568 EDO.6: 6 residues within 4Å: Chain B: K.372, M.375, L.376, L.408, Q.417 Ligands: EDO.4 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.417 Water bridges: B:M.375 EDO.9: 3 residues within 4Å: Chain B: K.541 Chain C: V.41, D.133 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:D.133, C:D.133 Water bridges: C:G.135 EDO.10: 5 residues within 4Å: Chain B: N.420 Chain D: R.23, T.33, C.42, I.44 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:R.23, D:R.23, D:C.42

1 x CYS: CYSTEINE(Non-covalent)

CYS.7: 4 residues within 4Å: Chain B: Y.22, C.26, R.73, A.763 No protein-ligand interaction detected (PLIP)

1 x DIO: 1,4-DIETHYLENE DIOXIDE(Non-covalent)

DIO.8: 7 residues within 4Å: Chain B: F.341, Y.342, H.345, Q.410, K.476, E.617, E.621 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jore, M.M. et al., Structural basis for therapeutic inhibition of complement C5. Nat.Struct.Mol.Biol. (2016)

Release Date

2016-03-30

Peptides

Complement C5: A
Complement C5: B
Complement inhibitor: C
Dermacentor andersoni RaCI3: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

C
C

D
D

Complement C5

Complement C5

Complement inhibitor

Dermacentor andersoni RaCI3

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