SMTL ID : 5hdm.1

Crystal structure of Arabidopsis thaliana glutamate-1-semialdehyde-2,1-aminomutase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

homo-dimer

Ligands

2 x PMP: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE(Non-covalent)

PMP.1: 14 residues within 4Å: Chain A: S.123, G.124, T.125, Y.151, H.152, G.153, E.213, N.218, D.246, V.248, M.249, K.274 Chain B: G.305, T.306 17 PLIP interactions: 12 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:E.213, A:V.248 Hydrogen bonds: A:S.123, A:G.124, A:T.125, A:T.125, A:N.218, A:N.218, A:K.274, B:T.306, B:T.306, B:T.306, B:T.306 Water bridges: A:S.123, A:S.123, B:L.307 pi-Stacking: A:Y.151 PMP.3: 15 residues within 4Å: Chain A: G.305, T.306 Chain B: S.123, G.124, T.125, Y.151, H.152, G.153, E.213, N.218, D.246, V.248, M.249, K.274 Ligands: PLP.2 15 PLIP interactions: 4 interactions with chain A, 11 interactions with chain B Hydrogen bonds: A:T.306, A:T.306, A:T.306, B:G.124, B:T.125, B:N.218, B:N.218, B:K.274 Hydrophobic interactions: B:E.213, B:V.248 Salt bridges: B:K.274 Water bridges: A:L.307, B:S.123, B:S.123 pi-Stacking: B:Y.151

1 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)

PLP.2: 15 residues within 4Å: Chain A: G.305, T.306 Chain B: S.123, G.124, T.125, Y.151, H.152, G.153, E.213, N.218, D.246, V.248, M.249, K.274 Ligands: PMP.3 13 PLIP interactions: 3 interactions with chain A, 10 interactions with chain B Hydrogen bonds: A:T.306, A:T.306, B:G.124, B:T.125, B:N.218, B:K.274 Hydrophobic interactions: B:Y.151, B:E.213, B:V.248, B:K.274 Salt bridges: B:K.274 Water bridges: A:L.307, B:S.123

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Song, Y. et al., Crystal structure of glutamate-1-semialdehyde-2,1-aminomutase from Arabidopsis thaliana. Acta Crystallogr.,Sect.F (2016)

Release Date

2016-06-15

Peptides

Glutamate-1-semialdehyde 2,1-aminomutase 1, chloroplastic: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutamate-1-semialdehyde 2,1-aminomutase 1, chloroplastic