SMTL ID : 5hez.5 (4 other biounits)

JAK2 kinase (JH1 domain) mutant P1057A in complex with TG101209

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.66 Å

Oligo State

homo-octamer

Ligands

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: K.253 Ligands: 1M3.10 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain B: K.253 Ligands: 1M3.12 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain D: K.253 Ligands: 1M3.6 Ligand excluded by PLIP CL.14: 2 residues within 4Å: Chain E: K.253 Ligands: 1M3.23 Ligand excluded by PLIP CL.18: 2 residues within 4Å: Chain F: K.253 Ligands: 1M3.25 Ligand excluded by PLIP CL.24: 2 residues within 4Å: Chain H: K.253 Ligands: 1M3.19 Ligand excluded by PLIP

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: H.56, H.61 Chain H: H.56, H.61 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain H Metal complexes: A:H.56, A:H.61, H:H.56, H:H.61 ZN.8: 4 residues within 4Å: Chain B: H.56, H.61 Chain C: H.56, H.61 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain C Metal complexes: B:H.56, B:H.61, C:H.56, C:H.61 ZN.15: 4 residues within 4Å: Chain D: H.56, H.61 Chain E: H.56, H.61 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain E Metal complexes: D:H.56, D:H.61, E:H.56, E:H.61 ZN.21: 4 residues within 4Å: Chain F: H.56, H.61 Chain G: H.56, H.61 4 PLIP interactions: 2 interactions with chain G, 2 interactions with chain F Metal complexes: G:H.56, G:H.61, F:H.56, F:H.61

16 x 1M3: N-tert-butyl-3-[(5-methyl-2-{[4-(4-methylpiperazin-1-yl)phenyl]amino}pyrimidin-4-yl)amino]benzenesulfonamide(Non-covalent)

1M3.3: 14 residues within 4Å: Chain A: F.189, W.190, Y.191, P.193, L.196, W.208, L.248, L.251, G.256, R.257 Chain C: M.234, I.249, L.252, K.253 13 PLIP interactions: 3 interactions with chain C, 10 interactions with chain A Hydrophobic interactions: C:I.249, C:K.253, C:K.253, A:F.189, A:F.189, A:Y.191, A:P.193, A:L.196, A:L.248, A:L.251 Hydrogen bonds: A:F.189, A:Y.191 pi-Stacking: A:W.190 1M3.4: 18 residues within 4Å: Chain A: L.25, G.26, K.27, V.33, A.50, V.81, M.99, E.100, Y.101, L.102, G.105, D.109, R.150, N.151, L.153, G.163, D.164 Chain B: R.17 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.25, A:L.25, A:V.33, A:V.33, A:A.50, A:V.81, A:Y.101, A:L.153 Hydrogen bonds: A:L.102, A:L.102, A:D.164, A:K.239 Water bridges: A:G.163 Salt bridges: A:D.109 1M3.6: 15 residues within 4Å: Chain B: F.189, W.190, Y.191, A.192, P.193, L.196, W.208, L.248, L.251, G.256 Chain D: M.234, I.249, L.252, K.253 Ligands: CL.11 10 PLIP interactions: 8 interactions with chain B, 2 interactions with chain D Hydrophobic interactions: B:F.189, B:F.189, B:Y.191, B:W.208, B:L.248, B:L.251, D:I.249, D:K.253 Hydrogen bonds: B:F.189 pi-Stacking: B:W.190 1M3.7: 19 residues within 4Å: Chain B: L.25, G.26, K.27, G.28, V.33, A.50, V.81, M.99, E.100, Y.101, L.102, G.105, D.109, R.150, N.151, L.153, G.163, D.164 Chain E: R.17 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:L.25, B:L.25, B:V.33, B:V.33, B:A.50, B:V.81, B:Y.101, B:L.153 Hydrogen bonds: B:L.102, B:L.102 Water bridges: B:G.163 Salt bridges: B:D.109 1M3.9: 19 residues within 4Å: Chain C: L.25, G.26, K.27, G.28, V.33, A.50, K.52, M.99, E.100, Y.101, L.102, G.105, D.109, R.150, N.151, L.153, G.163, D.164 Chain H: R.17 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:L.25, C:L.25, C:V.33, C:A.50, C:Y.101, C:L.153 Hydrogen bonds: C:L.102, C:L.102 Water bridges: C:G.163 Salt bridges: C:D.109 1M3.10: 14 residues within 4Å: Chain A: M.234, I.249, L.252, K.253 Chain C: F.189, W.190, Y.191, P.193, L.196, W.208, L.248, L.251, G.256 Ligands: CL.1 13 PLIP interactions: 10 interactions with chain C, 3 interactions with chain A Hydrophobic interactions: C:F.189, C:F.189, C:Y.191, C:P.193, C:W.208, C:L.248, C:L.251, A:I.249, A:K.253, A:K.253 Hydrogen bonds: C:F.189, C:Y.191 pi-Stacking: C:W.190 1M3.12: 14 residues within 4Å: Chain B: M.234, I.249, L.252, K.253 Chain D: F.189, W.190, Y.191, P.193, L.196, W.208, L.248, L.251, G.256 Ligands: CL.5 12 PLIP interactions: 10 interactions with chain D, 2 interactions with chain B Hydrophobic interactions: D:F.189, D:F.189, D:Y.191, D:P.193, D:W.208, D:L.248, D:L.251, B:I.249, B:K.253 Hydrogen bonds: D:F.189, D:Y.191 pi-Stacking: D:W.190 1M3.13: 20 residues within 4Å: Chain C: R.17 Chain D: L.25, G.26, K.27, G.28, V.33, A.50, K.52, V.81, M.99, E.100, Y.101, L.102, G.105, D.109, R.150, N.151, L.153, G.163, D.164 12 PLIP interactions: 12 interactions with chain D Hydrophobic interactions: D:L.25, D:L.25, D:V.33, D:A.50, D:V.81, D:Y.101, D:L.153 Hydrogen bonds: D:L.102, D:L.102, D:D.164 Water bridges: D:G.163 Salt bridges: D:D.109 1M3.16: 14 residues within 4Å: Chain E: F.189, W.190, Y.191, P.193, L.196, W.208, L.248, L.251, G.256, R.257 Chain G: M.234, I.249, L.252, K.253 13 PLIP interactions: 10 interactions with chain E, 3 interactions with chain G Hydrophobic interactions: E:F.189, E:F.189, E:Y.191, E:P.193, E:L.196, E:L.248, E:L.251, G:I.249, G:K.253, G:K.253 Hydrogen bonds: E:F.189, E:Y.191 pi-Stacking: E:W.190 1M3.17: 18 residues within 4Å: Chain E: L.25, G.26, K.27, V.33, A.50, V.81, M.99, E.100, Y.101, L.102, G.105, D.109, R.150, N.151, L.153, G.163, D.164 Chain F: R.17 14 PLIP interactions: 14 interactions with chain E Hydrophobic interactions: E:L.25, E:L.25, E:V.33, E:V.33, E:A.50, E:V.81, E:Y.101, E:L.153 Hydrogen bonds: E:L.102, E:L.102, E:D.164, E:K.239 Water bridges: E:G.163 Salt bridges: E:D.109 1M3.19: 15 residues within 4Å: Chain F: F.189, W.190, Y.191, A.192, P.193, L.196, W.208, L.248, L.251, G.256 Chain H: M.234, I.249, L.252, K.253 Ligands: CL.24 10 PLIP interactions: 2 interactions with chain H, 8 interactions with chain F Hydrophobic interactions: H:I.249, H:K.253, F:F.189, F:F.189, F:Y.191, F:W.208, F:L.248, F:L.251 Hydrogen bonds: F:F.189 pi-Stacking: F:W.190 1M3.20: 19 residues within 4Å: Chain A: R.17 Chain F: L.25, G.26, K.27, G.28, V.33, A.50, V.81, M.99, E.100, Y.101, L.102, G.105, D.109, R.150, N.151, L.153, G.163, D.164 12 PLIP interactions: 12 interactions with chain F Hydrophobic interactions: F:L.25, F:L.25, F:V.33, F:V.33, F:A.50, F:V.81, F:Y.101, F:L.153 Hydrogen bonds: F:L.102, F:L.102 Water bridges: F:G.163 Salt bridges: F:D.109 1M3.22: 19 residues within 4Å: Chain D: R.17 Chain G: L.25, G.26, K.27, G.28, V.33, A.50, K.52, M.99, E.100, Y.101, L.102, G.105, D.109, R.150, N.151, L.153, G.163, D.164 10 PLIP interactions: 10 interactions with chain G Hydrophobic interactions: G:L.25, G:L.25, G:V.33, G:A.50, G:Y.101, G:L.153 Hydrogen bonds: G:L.102, G:L.102 Water bridges: G:G.163 Salt bridges: G:D.109 1M3.23: 14 residues within 4Å: Chain E: M.234, I.249, L.252, K.253 Chain G: F.189, W.190, Y.191, P.193, L.196, W.208, L.248, L.251, G.256 Ligands: CL.14 13 PLIP interactions: 10 interactions with chain G, 3 interactions with chain E Hydrophobic interactions: G:F.189, G:F.189, G:Y.191, G:P.193, G:W.208, G:L.248, G:L.251, E:I.249, E:K.253, E:K.253 Hydrogen bonds: G:F.189, G:Y.191 pi-Stacking: G:W.190 1M3.25: 14 residues within 4Å: Chain F: M.234, I.249, L.252, K.253 Chain H: F.189, W.190, Y.191, P.193, L.196, W.208, L.248, L.251, G.256 Ligands: CL.18 12 PLIP interactions: 10 interactions with chain H, 2 interactions with chain F Hydrophobic interactions: H:F.189, H:F.189, H:Y.191, H:P.193, H:W.208, H:L.248, H:L.251, F:I.249, F:K.253 Hydrogen bonds: H:F.189, H:Y.191 pi-Stacking: H:W.190 1M3.26: 20 residues within 4Å: Chain G: R.17 Chain H: L.25, G.26, K.27, G.28, V.33, A.50, K.52, V.81, M.99, E.100, Y.101, L.102, G.105, D.109, R.150, N.151, L.153, G.163, D.164 12 PLIP interactions: 12 interactions with chain H Hydrophobic interactions: H:L.25, H:L.25, H:V.33, H:A.50, H:V.81, H:Y.101, H:L.153 Hydrogen bonds: H:L.102, H:L.102, H:D.164 Water bridges: H:G.163 Salt bridges: H:D.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dendrou, C.A. et al., Resolving TYK2 locus genotype-to-phenotype differences in autoimmunity. Sci Transl Med (2016)

Release Date

2016-11-09

Peptides

Tyrosine-protein kinase JAK2: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
A

F
B

G
C

H
D

Tyrosine-protein kinase JAK2

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