SMTL ID : 5hgz.1

Crystal structure of human Naa60 in complex with acetyl-CoA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.38 Å

Oligo State

monomer

Ligands

1 x ACO: ACETYL COENZYME *A(Non-covalent)

ACO.1: 24 residues within 4Å: Chain A: W.34, F.35, I.99, L.100, S.101, L.102, G.103, V.104, R.109, K.110, H.111, G.112, I.113, G.114, S.115, H.139, N.144, T.146, A.147, F.150, Y.151, N.153, R.154 Ligands: MLA.2 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:F.35, A:L.102 Hydrogen bonds: A:L.102, A:V.104, A:R.109, A:K.110, A:H.111, A:G.112, A:I.113, A:G.114, A:S.115, A:N.144, A:Y.151, A:N.153 Water bridges: A:F.108, A:A.147 Salt bridges: A:R.154, A:R.154

2 x MLA: MALONIC ACID(Non-covalent)

MLA.2: 9 residues within 4Å: Chain A: F.35, I.37, Y.39, H.139, V.140, L.141, N.144, Y.166 Ligands: ACO.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.166 Hydrogen bonds: A:L.141, A:N.144 MLA.3: 5 residues within 4Å: Chain A: W.43, D.46, F.53, E.71, L.100 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.100 Hydrogen bonds: A:E.71 Water bridges: A:K.52, A:K.52, A:K.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, J.Y. et al., Structure and function of human Naa60 (NatF), a Golgi-localized bi-functional acetyltransferase. Sci Rep (2016)

Release Date

2016-09-14

Peptides

N-alpha-acetyltransferase 60: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

N-alpha-acetyltransferase 60