SMTL ID : 5hhh.1

Structure of human DNA polymerase beta Host-Guest complexed with the control G for N7-CBZ-platination

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.36 Å

Oligo State

monomer

Ligands

1 x DG- DT- DC- DG- DG: DNA (5'-D(P*GP*TP*CP*GP*G)-3')(Non-covalent)

DG-DT-DC-DG-DG.1: 18 residues within 4Å: Chain A: H.26, K.27, A.30, Y.31, L.54, P.55, G.56, V.57, G.58, T.59, K.60, I.61 Chain B: C.1, C.2, G.3, A.4, C.5 Ligands: NA.3 1 PLIP interactions: 1 interactions with chain A pi-Stacking: A:H.26

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 6 residues within 4Å: Chain A: T.93, V.95, S.96, G.97, I.98 Chain C: T.9 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.97, A:I.98, A:I.98 NA.3: 4 residues within 4Å: Chain A: K.52, L.54, V.57 Ligands: DG-DT-DC-DG-DG.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheun, Y. et al., Synthesis, structure, and biological evaluation of a platinum-carbazole conjugate. Chem Biol Drug Des (2018)

Release Date

2017-01-18

Peptides

DNA polymerase beta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA polymerase beta